-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1300

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 379, 637
Sorry, prediction Augustus_model.g41612.t1 fails validation.
(TGA)	 AG	379-637	GT	CGG
(GGG)	 AG	1692-1746	TG	GAT
-recovered Augustus_model.g41612.t1, terminal, 1692, 1746
-recovered Augustus_model.g41612.t1, internal, 379, 637
Couldn't classify 390, 477
Sorry, prediction GeneMark_model.109168_t fails validation.
(GGA)	 AG	390-477	GT	GAG
(AGC)	 AG	521-641	GC	AAG
-recovered GeneMark_model.109168_t, terminal, 521, 641
-recovered GeneMark_model.109168_t, internal, 390, 477
-recovered GeneMark_model.109168_t, internal, 521, 641

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 789, 989
Sorry, prediction snap_scaffold_1300-snap.1-T1 fails validation.
(AGG)	 AG	789-989	GT	ATG
(GCC)	 AG	2281-2393	GC	AGG
-recovered snap_scaffold_1300-snap.1-T1, terminal, 2281, 2393
-recovered snap_scaffold_1300-snap.1-T1, internal, 789, 989
-recovered snap_scaffold_1300-snap.1-T1, internal, 2281, 2393
Valid prediction for GlimmerHMM_glimmerT_62569-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2729
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support