-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_130

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 12658, 12813
Sorry, prediction GlimmerHMM_glimmerT_61353-T1 fails validation.
(ATG)	 TC	6203-6341	GT	GAG
(AGA)	 AG	12658-12813	GT	CAG
-recovered GlimmerHMM_glimmerT_61353-T1, initial, 6203, 6341
-recovered GlimmerHMM_glimmerT_61353-T1, internal, 12658, 12813
Valid prediction for GeneMark_model.106682_t
Valid prediction for GeneMark_model.106679_t
Valid prediction for snap_scaffold_130-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 335, 352
Sorry, prediction GeneMark_model.106683_t fails validation.
(AGG)	 AG	335-352	GT	GGG
(ACA)	 AG	696-837	GT	CAG
(AGC)	 AG	865-891	GG	GAG
-recovered GeneMark_model.106683_t, terminal, 865, 891
-recovered GeneMark_model.106683_t, internal, 335, 352
-recovered GeneMark_model.106683_t, internal, 696, 837
Valid prediction for snap_scaffold_130-snap.1-T1
Valid prediction for GeneMark_model.106681_t
Valid prediction for GeneMark_model.106680_t
Valid prediction for GlimmerHMM_glimmerT_61352-T1
Valid prediction for GeneMark_model.106678_t
Valid prediction for snap_scaffold_130-snap.3-T1
Couldn't classify 694, 795
Sorry, prediction snap_scaffold_130-snap.4-T1 fails validation.
(AGA)	 AG	694-795	GT	CAG
(CGA)	 AG	4336-4429	GT	ACG
(AGC)	 AG	4758-4858	CT	AAC
-recovered snap_scaffold_130-snap.4-T1, terminal, 4758, 4858
-recovered snap_scaffold_130-snap.4-T1, internal, 694, 795
-recovered snap_scaffold_130-snap.4-T1, internal, 4336, 4429
Valid prediction for GlimmerHMM_glimmerT_61351-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7163, rend_intergenic: 6139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 13740
-exon list size: 75


building trellis

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10.4    
11.7    
13.0    
14.3    
15.6    
16.9    
18.2    
19.5    
20.8    
22.1    
23.4    
24.7    
26.0    
27.3    
28.6    
29.9    
31.2    
32.5    
33.8    
35.1    
36.4    
37.7    
39.0    
40.3    
41.6    
42.9    
44.2    
45.5    
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48.1    
49.4    
50.6    
51.9    
53.2    
54.5    
55.8    
57.1    
58.4    
59.7    
61.0    
62.3    
63.6    
64.9    
66.2    
67.5    
68.8    
70.1    
71.4    
72.7    
74.0    
75.3    
76.6    
77.9    
79.2    
80.5    
81.8    
83.1    
84.4    
85.7    
87.0    
88.3    
89.6    
90.9    
92.2    
93.5    
94.8    
96.1    
97.4    
98.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 7163, rend_intergenic: 6139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support