-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_13/scaffold_13_967702-1340503

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_31738-T1
Valid prediction for HiQ_model.g21225.t1
Valid prediction for CodingQuarry_transcript_12824-T1
Valid prediction for GeneMark_model.54560_t
Valid prediction for GeneMark_model.54562_t
Couldn't classify 239392, 240390
Sorry, prediction pasa_asmbl_10506.p1 fails validation.
(CCA)	 TG	239392-240390	CA	AGC
Valid prediction for snap_scaffold_13-snap.218-T1
Valid prediction for GeneMark_model.54576_t
Couldn't classify 237533, 237922
Sorry, prediction pasa_asmbl_10505.p1 fails validation.
(CAG)	 CT	237533-237922	TA	CGT
Couldn't classify 90701, 90823
Sorry, prediction pasa_asmbl_10498.p1 fails validation.
(CCC)	 GA	90701-90823	GT	TGG
(ATC)	 AG	91164-91270	GT	AGG
(GAC)	 AG	91405-91588	GT	TGG
(AAT)	 AG	91711-91776	GT	AGG
(AAC)	 AG	94590-94607	GT	AGG
(GCC)	 AG	95509-95591	GT	GGG
(ACT)	 AG	95788-95834	GT	CTG
(ATG)	 AG	95973-96049	GT	ATG
(CAT)	 AG	96293-96340	AA	AAA
add_exon() Sorry, pasa_asmbl_10498.p1 95973-96049-initial-1 is invalid.
-recovered pasa_asmbl_10498.p1, initial, 95973, 96049
-recovered pasa_asmbl_10498.p1, terminal, 96293, 96340
-recovered pasa_asmbl_10498.p1, internal, 91164, 91270
-recovered pasa_asmbl_10498.p1, internal, 91405, 91588
-recovered pasa_asmbl_10498.p1, internal, 91711, 91776
-recovered pasa_asmbl_10498.p1, internal, 94590, 94607
-recovered pasa_asmbl_10498.p1, internal, 95509, 95591
-recovered pasa_asmbl_10498.p1, internal, 95788, 95834
-recovered pasa_asmbl_10498.p1, internal, 95973, 96049
Valid prediction for snap_scaffold_13-snap.232-T1
Valid prediction for GeneMark_model.54580_t
Valid prediction for GlimmerHMM_glimmerT_31735-T1
Valid prediction for GeneMark_model.54552_t
Valid prediction for pasa_asmbl_10512.p1
Valid prediction for Augustus_model.g21229.t1
Couldn't classify 367656, 367795
Sorry, prediction pasa_asmbl_10533.p1 fails validation.
(TTC)	 TG	367656-367795	GT	ACG
(GTT)	 AG	368527-368695	GT	AGG
(TGT)	 AG	368808-368901	GT	AGG
(GTT)	 AG	368994-369101	GT	AGG
(TGT)	 AG	369644-369753	GT	GGG
(GCA)	 AG	369844-369967	GT	GGG
(TTC)	 AG	370684-370781	GT	AGG
(TGC)	 AG	370899-371003	GT	AGG
(TCT)	 AG	371099-371137	GT	AGG
(GAG)	 AG	371216-371305	CA	GAC
add_exon() Sorry, pasa_asmbl_10533.p1 368808-368901-terminal-3 is invalid.
-recovered pasa_asmbl_10533.p1, terminal, 368808, 368901
-recovered pasa_asmbl_10533.p1, terminal, 371216, 371305
-recovered pasa_asmbl_10533.p1, internal, 368527, 368695
-recovered pasa_asmbl_10533.p1, internal, 368808, 368901
-recovered pasa_asmbl_10533.p1, internal, 368994, 369101
-recovered pasa_asmbl_10533.p1, internal, 369644, 369753
-recovered pasa_asmbl_10533.p1, internal, 369844, 369967
-recovered pasa_asmbl_10533.p1, internal, 370684, 370781
-recovered pasa_asmbl_10533.p1, internal, 370899, 371003
-recovered pasa_asmbl_10533.p1, internal, 371099, 371137
Valid prediction for GeneMark_model.54569_t
Couldn't classify 122389, 122499
Couldn't classify 125595, 125723
Sorry, prediction pasa_asmbl_10500.p1 fails validation.
(AAG)	 AC	122389-122499	GT	AGG
(CGA)	 AG	122597-122899	GT	AGG
(AAT)	 AG	123797-123861	GT	AGG
(CAC)	 AG	124107-124252	GT	AGG
(ACG)	 AG	124503-124645	GT	GGG
(TTT)	 AG	124741-124899	GT	ATG
(AAA)	 AG	124983-125061	GT	CGG
(AAA)	 AG	125179-125252	GT	TGG
(ATC)	 AG	125377-125466	GT	AGG
(ATG)	 AG	125595-125723	GA	ACG
-recovered pasa_asmbl_10500.p1, internal, 122597, 122899
-recovered pasa_asmbl_10500.p1, internal, 123797, 123861
-recovered pasa_asmbl_10500.p1, internal, 124107, 124252
-recovered pasa_asmbl_10500.p1, internal, 124503, 124645
-recovered pasa_asmbl_10500.p1, internal, 124741, 124899
-recovered pasa_asmbl_10500.p1, internal, 124983, 125061
-recovered pasa_asmbl_10500.p1, internal, 125179, 125252
-recovered pasa_asmbl_10500.p1, internal, 125377, 125466
Valid prediction for GlimmerHMM_glimmerT_31743-T1
Valid prediction for GlimmerHMM_glimmerT_31752-T1
Valid prediction for GlimmerHMM_glimmerT_31737-T1
Valid prediction for GeneMark_model.54577_t
Valid prediction for CodingQuarry_transcript_12827-T1
Valid prediction for Augustus_model.g21235.t1
Valid prediction for snap_scaffold_13-snap.231-T1
Valid prediction for GlimmerHMM_glimmerT_31753-T1
Valid prediction for GlimmerHMM_glimmerT_31746-T1
Valid prediction for snap_scaffold_13-snap.209-T1
Valid prediction for GeneMark_model.54566_t
Valid prediction for Augustus_model.g21233.t1
Valid prediction for snap_scaffold_13-snap.236-T1
Valid prediction for GeneMark_model.54547_t
Valid prediction for pasa_asmbl_10529.p1
Valid prediction for GeneMark_model.54572_t
Valid prediction for GeneMark_model.54558_t
Valid prediction for GeneMark_model.54550_t
Valid prediction for GlimmerHMM_glimmerT_31731-T1
Valid prediction for CodingQuarry_transcript_12826-T1
Valid prediction for GlimmerHMM_glimmerT_31744-T1
Valid prediction for CodingQuarry_transcript_12825-T1
Valid prediction for GeneMark_model.54581_t
Valid prediction for GeneMark_model.54543_t
Valid prediction for Augustus_model.g21234.t1
Valid prediction for snap_scaffold_13-snap.219-T1
Couldn't classify 126033, 126060
Couldn't classify 128610, 128909
Sorry, prediction pasa_asmbl_10501.p2 fails validation.
(AGC)	 CC	126033-126060	GT	AGG
(ATT)	 AG	128383-128414	GT	AGG
(GGC)	 AG	128610-128909	AA	GGA
-recovered pasa_asmbl_10501.p2, internal, 128383, 128414
Valid prediction for pasa_asmbl_10517.p1
Couldn't classify 342164, 342356
Couldn't classify 342573, 342760
Sorry, prediction pasa_asmbl_11624.p1 fails validation.
(TTC)	 AG	342164-342356	GT	ACG
(AGT)	 AG	342573-342760	GA	GCG
-recovered pasa_asmbl_11624.p1, internal, 342164, 342356
Couldn't classify 129786, 130151
Sorry, prediction pasa_asmbl_10503.p2 fails validation.
(AGA)	 GC	129786-130151	GC	GAG
Valid prediction for snap_scaffold_13-snap.198-T1
Valid prediction for GlimmerHMM_glimmerT_31741-T1
Valid prediction for GeneMark_model.54559_t
Valid prediction for snap_scaffold_13-snap.206-T1
Valid prediction for GeneMark_model.54548_t
Valid prediction for GeneMark_model.54582_t
Valid prediction for snap_scaffold_13-snap.200-T1
Valid prediction for GeneMark_model.54575_t
Valid prediction for HiQ_model.g21237.t1
Valid prediction for snap_scaffold_13-snap.197-T1
Couldn't classify 337472, 337555
Couldn't classify 337898, 338051
Sorry, prediction pasa_asmbl_11618.p2 fails validation.
(GTC)	 CT	337472-337555	GT	TGG
(GAC)	 AG	337647-337744	GT	AAG
(CTG)	 AG	337898-338051	AG	GGA
-recovered pasa_asmbl_11618.p2, internal, 337647, 337744
Valid prediction for snap_scaffold_13-snap.213-T1
Valid prediction for Augustus_model.g21236.t1
Valid prediction for HiQ_model.g21243.t1
Valid prediction for snap_scaffold_13-snap.239-T1
Valid prediction for HiQ_model.g21227.t1
Couldn't classify 242861, 243622
Couldn't classify 246664, 246797
Sorry, prediction pasa_asmbl_10508.p1 fails validation.
(CAA)	 GT	242861-243622	GT	GGG
(GCC)	 AG	243941-244144	GT	AGG
(CAA)	 AG	245155-245319	GT	AGG
(AAC)	 AG	245610-245736	GT	GGG
(TGT)	 AG	245966-246113	GT	AGG
(TAG)	 AG	246313-246500	GT	AGG
(GCT)	 AG	246664-246797	GT	AGG
add_exon() Sorry, pasa_asmbl_10508.p1 245966-246113-terminal-3 is invalid.
-recovered pasa_asmbl_10508.p1, terminal, 245966, 246113
-recovered pasa_asmbl_10508.p1, internal, 243941, 244144
-recovered pasa_asmbl_10508.p1, internal, 245155, 245319
-recovered pasa_asmbl_10508.p1, internal, 245610, 245736
-recovered pasa_asmbl_10508.p1, internal, 245966, 246113
-recovered pasa_asmbl_10508.p1, internal, 246313, 246500
-recovered pasa_asmbl_10508.p1, internal, 246664, 246797
Valid prediction for snap_scaffold_13-snap.212-T1
Valid prediction for GlimmerHMM_glimmerT_31734-T1
Valid prediction for GeneMark_model.54551_t
Valid prediction for Augustus_model.g21224.t1
Valid prediction for snap_scaffold_13-snap.224-T1
Valid prediction for GlimmerHMM_glimmerT_31733-T1
Valid prediction for GeneMark_model.54571_t
Valid prediction for snap_scaffold_13-snap.220-T1
Couldn't classify 242219, 242620
Sorry, prediction pasa_asmbl_10507.p1 fails validation.
(CCC)	 CC	242219-242620	CT	ATC
Couldn't classify 247410, 247443
Couldn't classify 249248, 249724
Sorry, prediction pasa_asmbl_10509.p1 fails validation.
(GGG)	 AG	247410-247443	GT	AGG
(CCA)	 AG	248157-248284	GT	AGG
(GAG)	 AG	249008-249136	GT	AGG
(GAC)	 AG	249248-249724	CT	GGC
-recovered pasa_asmbl_10509.p1, internal, 247410, 247443
-recovered pasa_asmbl_10509.p1, internal, 248157, 248284
-recovered pasa_asmbl_10509.p1, internal, 249008, 249136
Valid prediction for snap_scaffold_13-snap.215-T1
Valid prediction for snap_scaffold_13-snap.205-T1
Valid prediction for snap_scaffold_13-snap.201-T1
Valid prediction for snap_scaffold_13-snap.223-T1
Valid prediction for snap_scaffold_13-snap.226-T1
Valid prediction for snap_scaffold_13-snap.222-T1
Valid prediction for Augustus_model.g21230.t1
Valid prediction for GlimmerHMM_glimmerT_31745-T1
Valid prediction for snap_scaffold_13-snap.240-T1
Couldn't classify 226018, 226137
Sorry, prediction pasa_asmbl_10504.p1 fails validation.
(CAG)	 CA	226018-226137	GT	GGG
(GTG)	 AG	226681-226785	GT	AAG
(GAC)	 AG	226900-227004	GT	AGG
(ATC)	 AG	227102-227283	GT	TGG
(GGA)	 AG	227627-227636	TC	GAT
-recovered pasa_asmbl_10504.p1, terminal, 227627, 227636
-recovered pasa_asmbl_10504.p1, internal, 226681, 226785
-recovered pasa_asmbl_10504.p1, internal, 226900, 227004
-recovered pasa_asmbl_10504.p1, internal, 227102, 227283
Valid prediction for GeneMark_model.54546_t
Valid prediction for GlimmerHMM_glimmerT_31747-T1
Valid prediction for snap_scaffold_13-snap.214-T1
Valid prediction for GlimmerHMM_glimmerT_31739-T1
Valid prediction for GeneMark_model.54541_t
Couldn't classify 367384, 367547
Sorry, prediction pasa_asmbl_10531.p1 fails validation.
(ATG)	 CA	363944-364086	GT	AGG
(AAC)	 AG	365434-365482	GT	TGG
(AAT)	 AG	366012-366140	GT	ATG
(ATG)	 AG	366656-366770	GT	AGG
(CGT)	 AG	367384-367547	CC	AGC
-recovered pasa_asmbl_10531.p1, initial, 363944, 364086
-recovered pasa_asmbl_10531.p1, initial, 366656, 366770
-recovered pasa_asmbl_10531.p1, internal, 365434, 365482
-recovered pasa_asmbl_10531.p1, internal, 366012, 366140
-recovered pasa_asmbl_10531.p1, internal, 366656, 366770
Valid prediction for GeneMark_model.54567_t
Couldn't classify 72325, 72570
Sorry, prediction pasa_asmbl_10495.p1 fails validation.
(GTG)	 CA	72325-72570	GT	AGG
(GCC)	 AG	73555-73745	GT	AGG
(ACG)	 AG	73989-74124	GT	AGG
(GTA)	 AG	74561-74720	GT	AGG
(GTT)	 AG	75797-75909	GT	AGG
(GTG)	 AG	76748-76837	GT	ACG
(ACA)	 AG	77969-78061	AT	AAA
-recovered pasa_asmbl_10495.p1, terminal, 77969, 78061
-recovered pasa_asmbl_10495.p1, internal, 73555, 73745
-recovered pasa_asmbl_10495.p1, internal, 73989, 74124
-recovered pasa_asmbl_10495.p1, internal, 74561, 74720
-recovered pasa_asmbl_10495.p1, internal, 75797, 75909
-recovered pasa_asmbl_10495.p1, internal, 76748, 76837
Valid prediction for snap_scaffold_13-snap.233-T1
Valid prediction for Augustus_model.g21228.t1
Valid prediction for GlimmerHMM_glimmerT_31751-T1
Valid prediction for GeneMark_model.54579_t
Valid prediction for snap_scaffold_13-snap.208-T1
Valid prediction for snap_scaffold_13-snap.216-T1
Valid prediction for snap_scaffold_13-snap.217-T1
Valid prediction for Augustus_model.g21241.t1
Valid prediction for snap_scaffold_13-snap.207-T1
Valid prediction for GeneMark_model.54556_t
Couldn't classify 261983, 262291
Sorry, prediction pasa_asmbl_10522.p1 fails validation.
(AGA)	 AC	261983-262291	AT	GAA
Valid prediction for snap_scaffold_13-snap.238-T1
Valid prediction for Augustus_model.g21231.t1
Valid prediction for snap_scaffold_13-snap.234-T1
Valid prediction for Augustus_model.g21242.t1
Valid prediction for snap_scaffold_13-snap.235-T1
Couldn't classify 129231, 129578
Sorry, prediction pasa_asmbl_10502.p2 fails validation.
(ATG)	 CC	129231-129578	AC	GCA

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.54568_t
Valid prediction for GeneMark_model.54549_t
Valid prediction for GeneMark_model.54544_t
Valid prediction for GlimmerHMM_glimmerT_31750-T1
Valid prediction for snap_scaffold_13-snap.241-T1
Valid prediction for GeneMark_model.54565_t
Valid prediction for HiQ_model.g21223.t1
Valid prediction for GeneMark_model.54554_t
Valid prediction for GeneMark_model.54578_t
Valid prediction for GlimmerHMM_glimmerT_31736-T1
Valid prediction for snap_scaffold_13-snap.203-T1
Valid prediction for HiQ_model.g21239.t1
Valid prediction for GeneMark_model.54542_t
Valid prediction for GeneMark_model.54563_t
Valid prediction for snap_scaffold_13-snap.204-T1
Valid prediction for snap_scaffold_13-snap.210-T1
Valid prediction for snap_scaffold_13-snap.221-T1
Valid prediction for snap_scaffold_13-snap.211-T1
Valid prediction for snap_scaffold_13-snap.228-T1
Valid prediction for snap_scaffold_13-snap.196-T1
Valid prediction for GeneMark_model.54574_t
Valid prediction for GeneMark_model.54561_t
Couldn't classify 349631, 349716
Sorry, prediction pasa_asmbl_9356.p1 fails validation.
(GAG)	 AT	349631-349716	GT	AGG
(GTG)	 AG	350326-350510	GT	AGG
(AGC)	 AG	350702-350863	GT	AGG
(AAA)	 AG	350938-351084	GC	AGG
(GGC)	 AG	351183-351310	GT	AGG
(TGG)	 AG	351415-351614	GT	AAG
(GGC)	 AG	351726-352038	GC	AGG
-recovered pasa_asmbl_9356.p1, terminal, 351726, 352038
-recovered pasa_asmbl_9356.p1, internal, 350326, 350510
-recovered pasa_asmbl_9356.p1, internal, 350702, 350863
-recovered pasa_asmbl_9356.p1, internal, 350938, 351084
-recovered pasa_asmbl_9356.p1, internal, 351183, 351310
-recovered pasa_asmbl_9356.p1, internal, 351415, 351614
-recovered pasa_asmbl_9356.p1, internal, 351726, 352038
Valid prediction for GlimmerHMM_glimmerT_31732-T1
Valid prediction for CodingQuarry_transcript_12828-T1
Valid prediction for pasa_asmbl_9362.p1
Valid prediction for GlimmerHMM_glimmerT_31742-T1
Valid prediction for GlimmerHMM_glimmerT_31749-T1
Valid prediction for Augustus_model.g21240.t1
Valid prediction for snap_scaffold_13-snap.229-T1
Valid prediction for GeneMark_model.54557_t
Valid prediction for GlimmerHMM_glimmerT_31748-T1
Valid prediction for GeneMark_model.54555_t
Valid prediction for Augustus_model.g21226.t1
Valid prediction for GeneMark_model.54570_t
Valid prediction for snap_scaffold_13-snap.202-T1
Valid prediction for Augustus_model.g21238.t1
Couldn't classify 72769, 72855
Sorry, prediction pasa_asmbl_10410.p1 fails validation.
(ATG)	 CC	72329-72379	GT	AGG
(AGT)	 AG	72454-72510	GT	AAG
(GTA)	 AG	72613-72678	GT	AGG
(GCA)	 AG	72769-72855	CG	ATC
-recovered pasa_asmbl_10410.p1, initial, 72329, 72379
-recovered pasa_asmbl_10410.p1, internal, 72454, 72510
-recovered pasa_asmbl_10410.p1, internal, 72613, 72678
Valid prediction for snap_scaffold_13-snap.230-T1
Valid prediction for snap_scaffold_13-snap.195-T1
Valid prediction for GeneMark_model.54553_t
Valid prediction for snap_scaffold_13-snap.237-T1
Valid prediction for snap_scaffold_13-snap.199-T1
Valid prediction for GeneMark_model.54545_t
Valid prediction for GlimmerHMM_glimmerT_31740-T1
Valid prediction for snap_scaffold_13-snap.227-T1
Valid prediction for GeneMark_model.54573_t
Valid prediction for snap_scaffold_13-snap.225-T1
Valid prediction for Augustus_model.g21232.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 352056, rend_intergenic: 343340  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 371305, rend_intergenic: 365595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 372802
-exon list size: 773


building trellis

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29.7    
29.8    
29.9    
30.1    
30.2    
30.3    
30.5    
30.6    
30.7    
30.8    
31.0    
31.1    
31.2    
31.4    
31.5    
31.6    
31.7    
31.9    
32.0    
32.1    
32.3    
32.4    
32.5    
32.6    
32.8    
32.9    
33.0    
33.2    
33.3    
33.4    
33.5    
33.7    
33.8    
33.9    
34.1    
34.2    
34.3    
34.5    
34.6    
34.7    
34.8    
35.0    
35.1    
35.2    
35.4    
35.5    
35.6    
35.7    
35.9    
36.0    
36.1    
36.3    
36.4    
36.5    
36.6    
36.8    
36.9    
37.0    
37.2    
37.3    
37.4    
37.5    
37.7    
37.8    
37.9    
38.1    
38.2    
38.3    
38.5    
38.6    
38.7    
38.8    
39.0    
39.1    
39.2    
39.4    
39.5    
39.6    
39.7    
39.9    
40.0    
40.1    
40.3    
40.4    
40.5    
40.6    
40.8    
40.9    
41.0    
41.2    
41.3    
41.4    
41.5    
41.7    
41.8    
41.9    
42.1    
42.2    
42.3    
42.5    
42.6    
42.7    
42.8    
43.0    
43.1    
43.2    
43.4    
43.5    
43.6    
43.7    
43.9    
44.0    
44.1    
44.3    
44.4    
44.5    
44.6    
44.8    
44.9    
45.0    
45.2    
45.3    
45.4    
45.5    
45.7    
45.8    
45.9    
46.1    
46.2    
46.3    
46.5    
46.6    
46.7    
46.8    
47.0    
47.1    
47.2    
47.4    
47.5    
47.6    
47.7    
47.9    
48.0    
48.1    
48.3    
48.4    
48.5    
48.6    
48.8    
48.9    
49.0    
49.2    
49.3    
49.4    
49.5    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.5    
50.6    
50.7    
50.8    
51.0    
51.1    
51.2    
51.4    
51.5    
51.6    
51.7    
51.9    
52.0    
52.1    
52.3    
52.4    
52.5    
52.6    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.5    
53.7    
53.8    
53.9    
54.1    
54.2    
54.3    
54.5    
54.6    
54.7    
54.8    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.7    
55.9    
56.0    
56.1    
56.3    
56.4    
56.5    
56.6    
56.8    
56.9    
57.0    
57.2    
57.3    
57.4    
57.5    
57.7    
57.8    
57.9    
58.1    
58.2    
58.3    
58.5    
58.6    
58.7    
58.8    
59.0    
59.1    
59.2    
59.4    
59.5    
59.6    
59.7    
59.9    
60.0    
60.1    
60.3    
60.4    
60.5    
60.6    
60.8    
60.9    
61.0    
61.2    
61.3    
61.4    
61.5    
61.7    
61.8    
61.9    
62.1    
62.2    
62.3    
62.5    
62.6    
62.7    
62.8    
63.0    
63.1    
63.2    
63.4    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.3    
64.4    
64.5    
64.6    
64.8    
64.9    
65.0    
65.2    
65.3    
65.4    
65.5    
65.7    
65.8    
65.9    
66.1    
66.2    
66.3    
66.5    
66.6    
66.7    
66.8    
67.0    
67.1    
67.2    
67.4    
67.5    
67.6    
67.7    
67.9    
68.0    
68.1    
68.3    
68.4    
68.5    
68.6    
68.8    
68.9    
69.0    
69.2    
69.3    
69.4    
69.5    
69.7    
69.8    
69.9    
70.1    
70.2    
70.3    
70.5    
70.6    
70.7    
70.8    
71.0    
71.1    
71.2    
71.4    
71.5    
71.6    
71.7    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.6    
72.8    
72.9    
73.0    
73.2    
73.3    
73.4    
73.5    
73.7    
73.8    
73.9    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.8    
75.0    
75.1    
75.2    
75.4    
75.5    
75.6    
75.7    
75.9    
76.0    
76.1    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.2    
77.3    
77.4    
77.5    
77.7    
77.8    
77.9    
78.1    
78.2    
78.3    
78.5    
78.6    
78.7    
78.8    
79.0    
79.1    
79.2    
79.4    
79.5    
79.6    
79.7    
79.9    
80.0    
80.1    
80.3    
80.4    
80.5    
80.6    
80.8    
80.9    
81.0    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.5    
82.6    
82.7    
82.8    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.3    
84.4    
84.5    
84.6    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.5    
85.7    
85.8    
85.9    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.8    
87.0    
87.1    
87.2    
87.4    
87.5    
87.6    
87.7    
87.9    
88.0    
88.1    
88.3    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.5    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.8    
91.0    
91.1    
91.2    
91.4    
91.5    
91.6    
91.7    
91.9    
92.0    
92.1    
92.3    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.7    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.2    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.4    
99.5    
99.6    
99.7    
99.9    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 352056, rend_intergenic: 343340  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 371305, rend_intergenic: 365595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 20764
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 13007
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 2249 - 13007
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 2615 - 13007
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 2615 - 12851