-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_13/scaffold_13_7902338-8176550 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_13-snap.1448-T1 Valid prediction for HiQ_model.g21907.t1 Valid prediction for GlimmerHMM_glimmerT_32653-T1 Valid prediction for CodingQuarry_transcript_13093-T1 Valid prediction for snap_scaffold_13-snap.1454-T1 Valid prediction for GeneMark_model.55737_t Valid prediction for GeneMark_model.55747_t Couldn't classify 205164, 205247 Sorry, prediction pasa_asmbl_11086.p1 fails validation. (ATG) GG 203554-203623 GT CGG (GGG) AG 203716-203865 GT AGG (ATG) AG 203983-204069 GT AGG (CAT) AG 204161-204250 GT CAG (AAC) AG 204352-204383 GT AGG (GGT) AG 204539-204596 GT AGG (CCC) AG 204683-204885 GT AGG (CCC) AG 204962-205060 GT GGG (GAG) AG 205164-205247 TT ACT -recovered pasa_asmbl_11086.p1, initial, 203554, 203623 add_exon() Sorry, pasa_asmbl_11086.p1 203983-204069-initial-1 is invalid. -recovered pasa_asmbl_11086.p1, initial, 203983, 204069 -recovered pasa_asmbl_11086.p1, internal, 203716, 203865 -recovered pasa_asmbl_11086.p1, internal, 203983, 204069 -recovered pasa_asmbl_11086.p1, internal, 204161, 204250 -recovered pasa_asmbl_11086.p1, internal, 204352, 204383 -recovered pasa_asmbl_11086.p1, internal, 204539, 204596 -recovered pasa_asmbl_11086.p1, internal, 204683, 204885 -recovered pasa_asmbl_11086.p1, internal, 204962, 205060 Valid prediction for GlimmerHMM_glimmerT_32648-T1 Valid prediction for GlimmerHMM_glimmerT_32673-T1 Valid prediction for HiQ_model.g21913.t1 Valid prediction for snap_scaffold_13-snap.1429-T1 Valid prediction for snap_scaffold_13-snap.1459-T1 Valid prediction for Augustus_model.g21918.t1 Couldn't classify 235137, 235188 Sorry, prediction pasa_asmbl_11095.p1 fails validation. (ACA) AC 235137-235188 GT AGG (GAT) AG 235548-235848 GT TGG (GAT) AG 235989-236154 TG GAT -recovered pasa_asmbl_11095.p1, terminal, 235989, 236154 -recovered pasa_asmbl_11095.p1, internal, 235548, 235848 Valid prediction for CodingQuarry_transcript_13111-T1 Valid prediction for CodingQuarry_transcript_13112-T1 Valid prediction for Augustus_model.g21905.t1 Valid prediction for CodingQuarry_transcript_13102-T1 Valid prediction for CodingQuarry_transcript_13116-T1 Valid prediction for Augustus_model.g21909.t1 Valid prediction for pasa_asmbl_11089.p2 Couldn't classify 164933, 165895 Sorry, prediction pasa_asmbl_11081.p1 fails validation. (CTT) TT 164933-165895 CT GAC Valid prediction for pasa_asmbl_11070.p1 Valid prediction for snap_scaffold_13-snap.1428-T1 Valid prediction for GlimmerHMM_glimmerT_32661-T1 Valid prediction for GlimmerHMM_glimmerT_32672-T1 Valid prediction for HiQ_model.g21891.t1 Valid prediction for snap_scaffold_13-snap.1420-T1 Valid prediction for snap_scaffold_13-snap.1418-T1 Valid prediction for GeneMark_model.55765_t Couldn't classify 160359, 161165 Sorry, prediction pasa_asmbl_11080.p1 fails validation. (TTT) GT 160359-161165 GG AGG Valid prediction for Augustus_model.g21922.t1 Valid prediction for snap_scaffold_13-snap.1443-T1 Valid prediction for Augustus_model.g21893.t1 Valid prediction for snap_scaffold_13-snap.1437-T1 Valid prediction for GeneMark_model.55753_t Valid prediction for snap_scaffold_13-snap.1450-T1 Valid prediction for Augustus_model.g21917.t1 Valid prediction for snap_scaffold_13-snap.1441-T1 Valid prediction for snap_scaffold_13-snap.1433-T1 Valid prediction for HiQ_model.g21912.t1 Valid prediction for Augustus_model.g21889.t1 Valid prediction for GeneMark_model.55751_t Valid prediction for snap_scaffold_13-snap.1453-T1 Couldn't classify 253021, 253117 Sorry, prediction pasa_asmbl_11614.p1 fails validation. (ATG) CT 252133-252196 GT AGG (GGA) AG 252282-252538 GT CAG (CCC) AG 252682-252875 GT ATG (TGT) AG 253021-253117 GT CGG -recovered pasa_asmbl_11614.p1, initial, 252133, 252196 -recovered pasa_asmbl_11614.p1, internal, 252282, 252538 -recovered pasa_asmbl_11614.p1, internal, 252682, 252875 -recovered pasa_asmbl_11614.p1, internal, 253021, 253117 Valid prediction for snap_scaffold_13-snap.1427-T1 Valid prediction for HiQ_model.g21908.t1 Valid prediction for snap_scaffold_13-snap.1466-T1 Valid prediction for GeneMark_model.55744_t Valid prediction for snap_scaffold_13-snap.1424-T1 Valid prediction for GlimmerHMM_glimmerT_32650-T1 Valid prediction for GlimmerHMM_glimmerT_32657-T1 Valid prediction for snap_scaffold_13-snap.1457-T1 Valid prediction for snap_scaffold_13-snap.1460-T1 Valid prediction for GlimmerHMM_glimmerT_32665-T1 Valid prediction for HiQ_model.g21898.t1 Valid prediction for snap_scaffold_13-snap.1439-T1 Valid prediction for HiQ_model.g21919.t1 Valid prediction for snap_scaffold_13-snap.1449-T1 Couldn't classify 205450, 205503 Sorry, prediction pasa_asmbl_11087.p1 fails validation. (CAG) CT 205450-205503 GT CAG (ATC) AG 205623-205719 GT CGG (ACC) AG 205809-205955 GT AGG (TGT) AG 206055-206226 GT AGG (GGG) AG 206335-206396 GT AGG (GTT) AG 206483-206601 GT AGG (GGT) AG 206750-206833 AC AAA add_exon() Sorry, pasa_asmbl_11087.p1 205809-205955-terminal-1 is invalid. -recovered pasa_asmbl_11087.p1, terminal, 205809, 205955 -recovered pasa_asmbl_11087.p1, terminal, 206750, 206833 -recovered pasa_asmbl_11087.p1, internal, 205623, 205719 -recovered pasa_asmbl_11087.p1, internal, 205809, 205955 -recovered pasa_asmbl_11087.p1, internal, 206055, 206226 -recovered pasa_asmbl_11087.p1, internal, 206335, 206396 -recovered pasa_asmbl_11087.p1, internal, 206483, 206601 Valid prediction for GlimmerHMM_glimmerT_32663-T1 Valid prediction for snap_scaffold_13-snap.1434-T1 Valid prediction for CodingQuarry_transcript_13101-T1 Valid prediction for GlimmerHMM_glimmerT_32659-T1 Valid prediction for snap_scaffold_13-snap.1446-T1 Valid prediction for Augustus_model.g21906.t1 Valid prediction for CodingQuarry_transcript_13108-T1 Valid prediction for GlimmerHMM_glimmerT_32671-T1 Valid prediction for pasa_asmbl_11064.p1 Couldn't classify 223607, 223719 Sorry, prediction pasa_asmbl_11094.p1 fails validation. (AGA) GG 223607-223719 GT AGG (GGC) AG 223854-224202 TG GAT -recovered pasa_asmbl_11094.p1, terminal, 223854, 224202 Valid prediction for GlimmerHMM_glimmerT_32662-T1 Valid prediction for GeneMark_model.55762_t Valid prediction for GlimmerHMM_glimmerT_32670-T1 Valid prediction for GeneMark_model.55755_t Valid prediction for snap_scaffold_13-snap.1452-T1 Valid prediction for snap_scaffold_13-snap.1440-T1 Valid prediction for GeneMark_model.55752_t Valid prediction for snap_scaffold_13-snap.1417-T1 Valid prediction for GlimmerHMM_glimmerT_32667-T1 Valid prediction for GeneMark_model.55758_t Valid prediction for GlimmerHMM_glimmerT_32642-T1 Valid prediction for snap_scaffold_13-snap.1421-T1 Valid prediction for snap_scaffold_13-snap.1436-T1 Valid prediction for pasa_asmbl_11079.p1 Valid prediction for CodingQuarry_transcript_13106-T1 Valid prediction for HiQ_model.g21902.t1 Valid prediction for GlimmerHMM_glimmerT_32643-T1 Valid prediction for Augustus_model.g21916.t1 Valid prediction for Augustus_model.g21914.t1 Valid prediction for Augustus_model.g21910.t1 Valid prediction for snap_scaffold_13-snap.1464-T1 Valid prediction for Augustus_model.g21899.t1 Couldn't classify 51293, 51451 Sorry, prediction pasa_asmbl_11069.p1 fails validation. (GTT) CA 51293-51451 GT AGG (TGT) AG 51774-51806 GT GTG (CCC) AG 53122-53223 GT AGG (CCC) AG 53799-53855 GT AGG (GTG) AG 54361-54453 GT AGG (TAT) AG 54966-55151 GT CTG (GTC) AG 55280-55405 CA AGC -recovered pasa_asmbl_11069.p1, terminal, 55280, 55405 -recovered pasa_asmbl_11069.p1, internal, 51774, 51806 -recovered pasa_asmbl_11069.p1, internal, 53122, 53223 -recovered pasa_asmbl_11069.p1, internal, 53799, 53855 -recovered pasa_asmbl_11069.p1, internal, 54361, 54453 -recovered pasa_asmbl_11069.p1, internal, 54966, 55151 Valid prediction for CodingQuarry_transcript_13109-T1 Valid prediction for Augustus_model.g21896.t1 Valid prediction for pasa_asmbl_11084.p1 Valid prediction for GeneMark_model.55739_t Couldn't classify 181409, 181551 Sorry, prediction CodingQuarry_transcript_13105-T1 fails validation. (ATG) CC 169099-169189 GT TGG (AAT) AG 170303-170432 GT ATG (GCG) AG 170659-170859 GT GGG (GGG) AG 171003-171162 GT AGG (GAC) AG 171471-171584 GT TAG (ACA) AG 172014-172034 GT TGG (TGT) AG 172186-172206 GT ATG (GCC) AG 172307-172351 GT AGG (GGA) AG 172451-172504 GT TTG (GGA) AG 172660-172704 GT AGG (GGT) AG 172812-172838 GT AGG (GGT) AG 173008-173034 GT AGG (GGC) AG 173205-173249 GT AGG (GGT) AG 173341-173394 GT ATG (GGC) AG 174144-174206 GT AGG (GGG) AG 174358-174420 GT AGG (GGG) AG 174516-174569 GT ATG (GGC) AG 174664-174699 GT GAG (GGT) AG 174796-174858 GT GCG (GGG) AG 174953-175015 GT CAG (GGT) AG 176710-176772 GT AGG (GGG) AG 176915-176977 GT GGG (GGA) AG 177123-177173 GT AGG (GGT) AG 177255-177290 GT CGG (GGT) AG 177462-177524 GT ATG (AAC) AG 179104-179169 GT CGG (GGA) AG 180961-180996 GT ATG (GAG) AG 181084-181120 GT CTG (TGT) TG 181409-181551 GT GGG (TTT) AG 181673-181782 GT CAG (GGC) AG 182006-182192 GT AGG (GTG) AG 182687-182858 GT AGG (ACA) AG 182968-182997 GT GAG (TTT) AG 183083-183705 TT AGT -recovered CodingQuarry_transcript_13105-T1, initial, 169099, 169189 -recovered CodingQuarry_transcript_13105-T1, terminal, 183083, 183705 -recovered CodingQuarry_transcript_13105-T1, internal, 170303, 170432 -recovered CodingQuarry_transcript_13105-T1, internal, 170659, 170859 -recovered CodingQuarry_transcript_13105-T1, internal, 171003, 171162 -recovered CodingQuarry_transcript_13105-T1, internal, 171471, 171584 -recovered CodingQuarry_transcript_13105-T1, internal, 172014, 172034 -recovered CodingQuarry_transcript_13105-T1, internal, 172186, 172206 -recovered CodingQuarry_transcript_13105-T1, internal, 172307, 172351 -recovered CodingQuarry_transcript_13105-T1, internal, 172451, 172504 -recovered CodingQuarry_transcript_13105-T1, internal, 172660, 172704 -recovered CodingQuarry_transcript_13105-T1, internal, 172812, 172838 -recovered CodingQuarry_transcript_13105-T1, internal, 173008, 173034 -recovered CodingQuarry_transcript_13105-T1, internal, 173205, 173249 -recovered CodingQuarry_transcript_13105-T1, internal, 173341, 173394 -recovered CodingQuarry_transcript_13105-T1, internal, 174144, 174206 -recovered CodingQuarry_transcript_13105-T1, internal, 174358, 174420 -recovered CodingQuarry_transcript_13105-T1, internal, 174516, 174569 -recovered CodingQuarry_transcript_13105-T1, internal, 174664, 174699 -recovered CodingQuarry_transcript_13105-T1, internal, 174796, 174858 -recovered CodingQuarry_transcript_13105-T1, internal, 174953, 175015 -recovered CodingQuarry_transcript_13105-T1, internal, 176710, 176772 -recovered CodingQuarry_transcript_13105-T1, internal, 176915, 176977 -recovered CodingQuarry_transcript_13105-T1, internal, 177123, 177173 -recovered CodingQuarry_transcript_13105-T1, internal, 177255, 177290 -recovered CodingQuarry_transcript_13105-T1, internal, 177462, 177524 -recovered CodingQuarry_transcript_13105-T1, internal, 179104, 179169 -recovered CodingQuarry_transcript_13105-T1, internal, 180961, 180996 -recovered CodingQuarry_transcript_13105-T1, internal, 181084, 181120 -recovered CodingQuarry_transcript_13105-T1, internal, 181673, 181782 -recovered CodingQuarry_transcript_13105-T1, internal, 182006, 182192 -recovered CodingQuarry_transcript_13105-T1, internal, 182687, 182858 -recovered CodingQuarry_transcript_13105-T1, internal, 182968, 182997 Valid prediction for CodingQuarry_transcript_13098-T1 Valid prediction for snap_scaffold_13-snap.1442-T1 Valid prediction for snap_scaffold_13-snap.1456-T1 Valid prediction for GlimmerHMM_glimmerT_32654-T1 Valid prediction for CodingQuarry_transcript_13107-T1 Valid prediction for snap_scaffold_13-snap.1438-T1 Couldn't classify 211788, 211893 Sorry, prediction pasa_asmbl_11608.p1 fails validation. (GCT) CG 211788-211893 GT CGG (GGT) AG 212135-212268 GT AGG (GTG) AG 212361-212526 GT AGG (TTT) AG 212610-212691 GT GGG (CCA) AG 212806-212902 GT CAG (GGT) AG 212995-213105 GT AGG (ATC) AG 213227-213338 GT AGG (ATC) AG 213432-213514 CC GAC -recovered pasa_asmbl_11608.p1, terminal, 213432, 213514 -recovered pasa_asmbl_11608.p1, internal, 212135, 212268 -recovered pasa_asmbl_11608.p1, internal, 212361, 212526 -recovered pasa_asmbl_11608.p1, internal, 212610, 212691 -recovered pasa_asmbl_11608.p1, internal, 212806, 212902 -recovered pasa_asmbl_11608.p1, internal, 212995, 213105 -recovered pasa_asmbl_11608.p1, internal, 213227, 213338 Valid prediction for GlimmerHMM_glimmerT_32645-T1 Valid prediction for GeneMark_model.55757_t Valid prediction for GlimmerHMM_glimmerT_32677-T1 Valid prediction for pasa_asmbl_11083.p1 Valid prediction for Augustus_model.g21904.t1 Valid prediction for GeneMark_model.55760_t Valid prediction for GeneMark_model.55761_t Valid prediction for pasa_asmbl_11065.p1 Valid prediction for snap_scaffold_13-snap.1445-T1 Valid prediction for Augustus_model.g21890.t1 Valid prediction for GeneMark_model.55742_t Valid prediction for GlimmerHMM_glimmerT_32658-T1 Valid prediction for pasa_asmbl_11073.p1 Valid prediction for GlimmerHMM_glimmerT_32669-T1 Valid prediction for GlimmerHMM_glimmerT_32660-T1 Valid prediction for CodingQuarry_transcript_13113-T1 Valid prediction for GlimmerHMM_glimmerT_32666-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 30749, 30821 Sorry, prediction CodingQuarry_transcript_13119-T1 fails validation. (ATG) AG 30196-30301 GT AGG (GGA) AG 30427-30469 GT GTG (CAA) TA 30749-30821 GT CGG (ATT) AG 30919-31030 GT GAG (GTG) AG 31218-31345 GT TGG (GTG) AG 31510-31883 GT AGG (CAG) AG 31992-32121 AC GAA -recovered CodingQuarry_transcript_13119-T1, initial, 30196, 30301 -recovered CodingQuarry_transcript_13119-T1, terminal, 31992, 32121 -recovered CodingQuarry_transcript_13119-T1, internal, 30196, 30301 -recovered CodingQuarry_transcript_13119-T1, internal, 30427, 30469 -recovered CodingQuarry_transcript_13119-T1, internal, 30919, 31030 -recovered CodingQuarry_transcript_13119-T1, internal, 31218, 31345 -recovered CodingQuarry_transcript_13119-T1, internal, 31510, 31883 Valid prediction for CodingQuarry_transcript_13117-T1 Valid prediction for GlimmerHMM_glimmerT_32647-T1 Valid prediction for Augustus_model.g21923.t1 Valid prediction for Augustus_model.g21900.t1 Valid prediction for Augustus_model.g21888.t1 Valid prediction for GlimmerHMM_glimmerT_32676-T1 Valid prediction for GeneMark_model.55743_t Valid prediction for pasa_asmbl_11071.p1 Valid prediction for GlimmerHMM_glimmerT_32678-T1 Couldn't classify 30427, 30470 Couldn't classify 30750, 30821 Sorry, prediction CodingQuarry_transcript_13118-T1 fails validation. (ATG) AG 30196-30301 GT AGG (GGA) AG 30427-30470 TG TGT (AAA) AC 30750-30821 GT CGG (ATT) AG 30919-31030 GT GAG (GTG) AG 31218-31345 GT TGG (GTG) AG 31510-31883 GT AGG (CAG) AG 31992-32121 AC GAA -recovered CodingQuarry_transcript_13118-T1, initial, 30196, 30301 -recovered CodingQuarry_transcript_13118-T1, terminal, 31992, 32121 -recovered CodingQuarry_transcript_13118-T1, internal, 30196, 30301 -recovered CodingQuarry_transcript_13118-T1, internal, 30919, 31030 -recovered CodingQuarry_transcript_13118-T1, internal, 31218, 31345 -recovered CodingQuarry_transcript_13118-T1, internal, 31510, 31883 Valid prediction for GlimmerHMM_glimmerT_32649-T1 Valid prediction for GeneMark_model.55741_t Valid prediction for Augustus_model.g21897.t1 Valid prediction for snap_scaffold_13-snap.1463-T1 Valid prediction for CodingQuarry_transcript_13096-T1 Valid prediction for GlimmerHMM_glimmerT_32664-T1 Valid prediction for pasa_asmbl_9899.p1 Couldn't classify 212364, 212417 Couldn't classify 213588, 213628 Sorry, prediction pasa_asmbl_9881.p1 fails validation. (TCC) CA 212364-212417 GT AGG (ACC) AG 212581-212733 GT AGG (GAA) AG 212912-213070 GT AGG (AAG) AG 213238-213397 GT AGG (CGA) AG 213588-213628 AT GGA -recovered pasa_asmbl_9881.p1, internal, 212581, 212733 -recovered pasa_asmbl_9881.p1, internal, 212912, 213070 -recovered pasa_asmbl_9881.p1, internal, 213238, 213397 Valid prediction for GlimmerHMM_glimmerT_32651-T1 Valid prediction for HiQ_model.g21894.t1 Valid prediction for snap_scaffold_13-snap.1455-T1 Valid prediction for snap_scaffold_13-snap.1447-T1 Valid prediction for CodingQuarry_transcript_13097-T1 Couldn't classify 261923, 261950 Sorry, prediction pasa_asmbl_9872.p1 fails validation. (ATG) CA 261224-261340 GC AGG (GAG) AG 261442-261529 GT AGG (GGA) AG 261654-261774 GT TGG (GAA) AG 261923-261950 AC AGA -recovered pasa_asmbl_9872.p1, initial, 261224, 261340 -recovered pasa_asmbl_9872.p1, internal, 261442, 261529 -recovered pasa_asmbl_9872.p1, internal, 261654, 261774 Valid prediction for CodingQuarry_transcript_13114-T1 Valid prediction for GlimmerHMM_glimmerT_32675-T1 Valid prediction for GeneMark_model.55759_t Valid prediction for snap_scaffold_13-snap.1423-T1 Couldn't classify 148831, 148884 Sorry, prediction pasa_asmbl_9893.p1 fails validation. (TGT) CA 148831-148884 GT AGG (GTT) AG 149716-149856 GT AGG (GAT) AG 149986-150061 GT TTG (TGA) AG 150168-150250 GT AGG (GAT) AG 150428-150557 GT CAG (CCT) AG 150725-150813 GT AGG (GTT) AG 150892-150993 GT AGG (TGT) AG 151086-151310 GT AGG (ATG) AG 151434-151508 GT GGG (TCT) AG 151800-151902 GT AGG (GAG) AG 152007-152104 GT AGG (GCT) AG 152224-152331 GT GGG (ATG) AG 152447-152543 GT GTG (TAA) AG 152650-152745 GT TGG (TGA) AG 152973-153078 GT CGG (GCT) AG 153296-153383 GT ATG (AAA) AG 153571-153647 GT AAG (GGA) AG 153818-154010 GT AGG (ATC) AG 154125-154220 GA GAG -recovered pasa_asmbl_9893.p1, initial, 151434, 151508 -recovered pasa_asmbl_9893.p1, initial, 152447, 152543 -recovered pasa_asmbl_9893.p1, terminal, 154125, 154220 -recovered pasa_asmbl_9893.p1, internal, 149716, 149856 -recovered pasa_asmbl_9893.p1, internal, 149986, 150061 -recovered pasa_asmbl_9893.p1, internal, 150168, 150250 -recovered pasa_asmbl_9893.p1, internal, 150428, 150557 -recovered pasa_asmbl_9893.p1, internal, 150725, 150813 -recovered pasa_asmbl_9893.p1, internal, 150892, 150993 -recovered pasa_asmbl_9893.p1, internal, 151086, 151310 -recovered pasa_asmbl_9893.p1, internal, 151434, 151508 -recovered pasa_asmbl_9893.p1, internal, 151800, 151902 -recovered pasa_asmbl_9893.p1, internal, 152007, 152104 -recovered pasa_asmbl_9893.p1, internal, 152224, 152331 -recovered pasa_asmbl_9893.p1, internal, 152447, 152543 -recovered pasa_asmbl_9893.p1, internal, 152650, 152745 -recovered pasa_asmbl_9893.p1, internal, 152973, 153078 -recovered pasa_asmbl_9893.p1, internal, 153296, 153383 -recovered pasa_asmbl_9893.p1, internal, 153571, 153647 -recovered pasa_asmbl_9893.p1, internal, 153818, 154010 Valid prediction for GeneMark_model.55740_t Couldn't classify 31218, 31315 Sorry, prediction pasa_asmbl_10378.p1 fails validation. (ATG) CG 29402-29509 GT ACG (GTG) AG 29617-29807 GT AGG (GAC) AG 29925-30030 GT CTG (ACG) AG 30172-30301 GT AGG (GGA) AG 30427-30467 GT AGG (CCT) AG 30571-30577 GT CCG (GTG) AG 30754-30821 GT CGG (ATT) AG 30919-31030 GT GAG (GTG) AG 31218-31315 AA GCA -recovered pasa_asmbl_10378.p1, initial, 29402, 29509 -recovered pasa_asmbl_10378.p1, internal, 29617, 29807 -recovered pasa_asmbl_10378.p1, internal, 29925, 30030 -recovered pasa_asmbl_10378.p1, internal, 30172, 30301 -recovered pasa_asmbl_10378.p1, internal, 30427, 30467 -recovered pasa_asmbl_10378.p1, internal, 30571, 30577 -recovered pasa_asmbl_10378.p1, internal, 30754, 30821 -recovered pasa_asmbl_10378.p1, internal, 30919, 31030 Valid prediction for Augustus_model.g21911.t1 Valid prediction for snap_scaffold_13-snap.1451-T1 Valid prediction for GeneMark_model.55766_t Valid prediction for snap_scaffold_13-snap.1465-T1 Valid prediction for pasa_asmbl_9896.p1 Valid prediction for pasa_asmbl_9878.p1 Valid prediction for snap_scaffold_13-snap.1458-T1 Couldn't classify 7239, 7388 Couldn't classify 9080, 9303 Sorry, prediction pasa_asmbl_9904.p1 fails validation. (ACC) TG 7239-7388 GT AGG (CTC) AG 7501-7683 GT CTG (CAA) AG 7819-7990 GT TGG (ATT) AG 8080-8187 GT TGG (GAT) AG 8297-8506 GT AGG (GTG) AG 8589-8708 GT GGG (TTT) AG 8805-8939 GT AGG (AGG) AG 9080-9303 GA GGG -recovered pasa_asmbl_9904.p1, internal, 7501, 7683 -recovered pasa_asmbl_9904.p1, internal, 7819, 7990 -recovered pasa_asmbl_9904.p1, internal, 8080, 8187 -recovered pasa_asmbl_9904.p1, internal, 8297, 8506 -recovered pasa_asmbl_9904.p1, internal, 8589, 8708 -recovered pasa_asmbl_9904.p1, internal, 8805, 8939 Valid prediction for Augustus_model.g21921.t1 Valid prediction for CodingQuarry_transcript_13103-T1 Valid prediction for CodingQuarry_transcript_13099-T1 Valid prediction for GeneMark_model.55748_t Valid prediction for snap_scaffold_13-snap.1462-T1 Valid prediction for snap_scaffold_13-snap.1432-T1 Valid prediction for HiQ_model.g21895.t1 Valid prediction for GlimmerHMM_glimmerT_32674-T1 Valid prediction for GeneMark_model.55745_t Valid prediction for pasa_asmbl_9898.p1 Valid prediction for GlimmerHMM_glimmerT_32656-T1 Valid prediction for GlimmerHMM_glimmerT_32668-T1 Valid prediction for GeneMark_model.55763_t Valid prediction for snap_scaffold_13-snap.1422-T1 Valid prediction for snap_scaffold_13-snap.1461-T1 Valid prediction for GeneMark_model.55764_t Valid prediction for pasa_asmbl_9885.p2 Valid prediction for snap_scaffold_13-snap.1435-T1 Valid prediction for GlimmerHMM_glimmerT_32646-T1 Valid prediction for CodingQuarry_transcript_13110-T1 Valid prediction for GlimmerHMM_glimmerT_32644-T1 Valid prediction for HiQ_model.g21915.t1 Valid prediction for snap_scaffold_13-snap.1430-T1 Valid prediction for Augustus_model.g21901.t1 Valid prediction for GeneMark_model.55756_t Valid prediction for GlimmerHMM_glimmerT_32655-T1 Valid prediction for Augustus_model.g21924.t1 Couldn't classify 9397, 9691 Sorry, prediction pasa_asmbl_9903.p1 fails validation. (GTT) TG 9397-9691 GT AGG (ACT) AG 9884-10024 GT AGG (GTG) AG 10099-10236 GT AAG (AAA) AG 10424-10519 GT AGG (ATT) AG 10689-10796 GT AGG (CAG) AG 10956-11111 GT AGG (AAA) AG 11230-11433 GT TGG (AGT) AG 11627-11779 GT AGG (GTT) AG 11871-12078 GT AGG (GTA) AG 12430-12521 GT AGG (CCT) AG 12860-12997 GT AGG (GAT) AG 13141-13235 TT GAT -recovered pasa_asmbl_9903.p1, terminal, 13141, 13235 -recovered pasa_asmbl_9903.p1, internal, 9884, 10024 -recovered pasa_asmbl_9903.p1, internal, 10099, 10236 -recovered pasa_asmbl_9903.p1, internal, 10424, 10519 -recovered pasa_asmbl_9903.p1, internal, 10689, 10796 -recovered pasa_asmbl_9903.p1, internal, 10956, 11111 -recovered pasa_asmbl_9903.p1, internal, 11230, 11433 -recovered pasa_asmbl_9903.p1, internal, 11627, 11779 -recovered pasa_asmbl_9903.p1, internal, 11871, 12078 -recovered pasa_asmbl_9903.p1, internal, 12430, 12521 -recovered pasa_asmbl_9903.p1, internal, 12860, 12997 Valid prediction for snap_scaffold_13-snap.1431-T1 Couldn't classify 31319, 31345 Sorry, prediction pasa_asmbl_10381.p1 fails validation. (CAG) AA 31319-31345 GT TGG (GTG) AG 31510-31883 GT AGG (CAG) AG 31992-32121 AC GAA -recovered pasa_asmbl_10381.p1, terminal, 31992, 32121 -recovered pasa_asmbl_10381.p1, internal, 31510, 31883 Valid prediction for GeneMark_model.55754_t Valid prediction for CodingQuarry_transcript_13094-T1 Valid prediction for pasa_asmbl_9874.p1 Valid prediction for HiQ_model.g21920.t1 Valid prediction for GlimmerHMM_glimmerT_32652-T1 Valid prediction for snap_scaffold_13-snap.1467-T1 Valid prediction for HiQ_model.g21892.t1 Valid prediction for snap_scaffold_13-snap.1419-T1 Valid prediction for GeneMark_model.55746_t Valid prediction for HiQ_model.g21903.t1 Valid prediction for snap_scaffold_13-snap.1425-T1 Valid prediction for snap_scaffold_13-snap.1426-T1 Couldn't classify 211086, 211198 Couldn't classify 211601, 211675 Sorry, prediction pasa_asmbl_9882.p1 fails validation. (AAG) GT 211086-211198 GT CAG (TTG) AG 211335-211464 GT AGG (AAA) AG 211601-211675 GA GGG -recovered pasa_asmbl_9882.p1, internal, 211335, 211464 Valid prediction for snap_scaffold_13-snap.1444-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 175937, rend_intergenic: 173656 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 188186, rend_intergenic: 176695 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196843, rend_intergenic: 190499 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 267244, rend_intergenic: 262827 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 274213 -exon list size: 838 building trellis 0.1 0.2 0.4 0.5 0.6 0.7 0.8 1.0 1.1 1.2 1.3 1.4 1.5 1.7 1.8 1.9 2.0 2.1 2.3 2.4 2.5 2.6 2.7 2.9 3.0 3.1 3.2 3.3 3.5 3.6 3.7 3.8 3.9 4.0 4.2 4.3 4.4 4.5 4.6 4.8 4.9 5.0 5.1 5.2 5.4 5.5 5.6 5.7 5.8 6.0 6.1 6.2 6.3 6.4 6.5 6.7 6.8 6.9 7.0 7.1 7.3 7.4 7.5 7.6 7.7 7.9 8.0 8.1 8.2 8.3 8.5 8.6 8.7 8.8 8.9 9.0 9.2 9.3 9.4 9.5 9.6 9.8 9.9 10.0 10.1 10.2 10.4 10.5 10.6 10.7 10.8 11.0 11.1 11.2 11.3 11.4 11.5 11.7 11.8 11.9 12.0 12.1 12.3 12.4 12.5 12.6 12.7 12.9 13.0 13.1 13.2 13.3 13.5 13.6 13.7 13.8 13.9 14.0 14.2 14.3 14.4 14.5 14.6 14.8 14.9 15.0 15.1 15.2 15.4 15.5 15.6 15.7 15.8 16.0 16.1 16.2 16.3 16.4 16.5 16.7 16.8 16.9 17.0 17.1 17.3 17.4 17.5 17.6 17.7 17.9 18.0 18.1 18.2 18.3 18.5 18.6 18.7 18.8 18.9 19.0 19.2 19.3 19.4 19.5 19.6 19.8 19.9 20.0 20.1 20.2 20.4 20.5 20.6 20.7 20.8 21.0 21.1 21.2 21.3 21.4 21.5 21.7 21.8 21.9 22.0 22.1 22.3 22.4 22.5 22.6 22.7 22.9 23.0 23.1 23.2 23.3 23.5 23.6 23.7 23.8 23.9 24.0 24.2 24.3 24.4 24.5 24.6 24.8 24.9 25.0 25.1 25.2 25.4 25.5 25.6 25.7 25.8 26.0 26.1 26.2 26.3 26.4 26.5 26.7 26.8 26.9 27.0 27.1 27.3 27.4 27.5 27.6 27.7 27.9 28.0 28.1 28.2 28.3 28.5 28.6 28.7 28.8 28.9 29.0 29.2 29.3 29.4 29.5 29.6 29.8 29.9 30.0 30.1 30.2 30.4 30.5 30.6 30.7 30.8 31.0 31.1 31.2 31.3 31.4 31.5 31.7 31.8 31.9 32.0 32.1 32.3 32.4 32.5 32.6 32.7 32.9 33.0 33.1 33.2 33.3 33.5 33.6 33.7 33.8 33.9 34.0 34.2 34.3 34.4 34.5 34.6 34.8 34.9 35.0 35.1 35.2 35.4 35.5 35.6 35.7 35.8 36.0 36.1 36.2 36.3 36.4 36.5 36.7 36.8 36.9 37.0 37.1 37.3 37.4 37.5 37.6 37.7 37.9 38.0 38.1 38.2 38.3 38.5 38.6 38.7 38.8 38.9 39.0 39.2 39.3 39.4 39.5 39.6 39.8 39.9 40.0 40.1 40.2 40.4 40.5 40.6 40.7 40.8 41.0 41.1 41.2 41.3 41.4 41.5 41.7 41.8 41.9 42.0 42.1 42.3 42.4 42.5 42.6 42.7 42.9 43.0 43.1 43.2 43.3 43.5 43.6 43.7 43.8 43.9 44.0 44.2 44.3 44.4 44.5 44.6 44.8 44.9 45.0 45.1 45.2 45.4 45.5 45.6 45.7 45.8 46.0 46.1 46.2 46.3 46.4 46.5 46.7 46.8 46.9 47.0 47.1 47.3 47.4 47.5 47.6 47.7 47.9 48.0 48.1 48.2 48.3 48.5 48.6 48.7 48.8 48.9 49.0 49.2 49.3 49.4 49.5 49.6 49.8 49.9 50.0 50.1 50.2 50.4 50.5 50.6 50.7 50.8 51.0 51.1 51.2 51.3 51.4 51.5 51.7 51.8 51.9 52.0 52.1 52.3 52.4 52.5 52.6 52.7 52.9 53.0 53.1 53.2 53.3 53.5 53.6 53.7 53.8 53.9 54.0 54.2 54.3 54.4 54.5 54.6 54.8 54.9 55.0 55.1 55.2 55.4 55.5 55.6 55.7 55.8 56.0 56.1 56.2 56.3 56.4 56.5 56.7 56.8 56.9 57.0 57.1 57.3 57.4 57.5 57.6 57.7 57.9 58.0 58.1 58.2 58.3 58.5 58.6 58.7 58.8 58.9 59.0 59.2 59.3 59.4 59.5 59.6 59.8 59.9 60.0 60.1 60.2 60.4 60.5 60.6 60.7 60.8 61.0 61.1 61.2 61.3 61.4 61.5 61.7 61.8 61.9 62.0 62.1 62.3 62.4 62.5 62.6 62.7 62.9 63.0 63.1 63.2 63.3 63.5 63.6 63.7 63.8 63.9 64.0 64.2 64.3 64.4 64.5 64.6 64.8 64.9 65.0 65.1 65.2 65.4 65.5 65.6 65.7 65.8 66.0 66.1 66.2 66.3 66.4 66.5 66.7 66.8 66.9 67.0 67.1 67.3 67.4 67.5 67.6 67.7 67.9 68.0 68.1 68.2 68.3 68.5 68.6 68.7 68.8 68.9 69.0 69.2 69.3 69.4 69.5 69.6 69.8 69.9 70.0 70.1 70.2 70.4 70.5 70.6 70.7 70.8 71.0 71.1 71.2 71.3 71.4 71.5 71.7 71.8 71.9 72.0 72.1 72.3 72.4 72.5 72.6 72.7 72.9 73.0 73.1 73.2 73.3 73.5 73.6 73.7 73.8 73.9 74.0 74.2 74.3 74.4 74.5 74.6 74.8 74.9 75.0 75.1 75.2 75.4 75.5 75.6 75.7 75.8 76.0 76.1 76.2 76.3 76.4 76.5 76.7 76.8 76.9 77.0 77.1 77.3 77.4 77.5 77.6 77.7 77.9 78.0 78.1 78.2 78.3 78.5 78.6 78.7 78.8 78.9 79.0 79.2 79.3 79.4 79.5 79.6 79.8 79.9 80.0 80.1 80.2 80.4 80.5 80.6 80.7 80.8 81.0 81.1 81.2 81.3 81.4 81.5 81.7 81.8 81.9 82.0 82.1 82.3 82.4 82.5 82.6 82.7 82.9 83.0 83.1 83.2 83.3 83.5 83.6 83.7 83.8 83.9 84.0 84.2 84.3 84.4 84.5 84.6 84.8 84.9 85.0 85.1 85.2 85.4 85.5 85.6 85.7 85.8 86.0 86.1 86.2 86.3 86.4 86.5 86.7 86.8 86.9 87.0 87.1 87.3 87.4 87.5 87.6 87.7 87.9 88.0 88.1 88.2 88.3 88.5 88.6 88.7 88.8 88.9 89.0 89.2 89.3 89.4 89.5 89.6 89.8 89.9 90.0 90.1 90.2 90.4 90.5 90.6 90.7 90.8 91.0 91.1 91.2 91.3 91.4 91.5 91.7 91.8 91.9 92.0 92.1 92.3 92.4 92.5 92.6 92.7 92.9 93.0 93.1 93.2 93.3 93.5 93.6 93.7 93.8 93.9 94.0 94.2 94.3 94.4 94.5 94.6 94.8 94.9 95.0 95.1 95.2 95.4 95.5 95.6 95.7 95.8 96.0 96.1 96.2 96.3 96.4 96.5 96.7 96.8 96.9 97.0 97.1 97.3 97.4 97.5 97.6 97.7 97.9 98.0 98.1 98.2 98.3 98.5 98.6 98.7 98.8 98.9 99.0 99.2 99.3 99.4 99.5 99.6 99.8 99.9 -found 42 predictions from path traversal Error with prediction: snap lend_intergenic: 175937, rend_intergenic: 173656 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 188186, rend_intergenic: 176695 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196843, rend_intergenic: 190499 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 267244, rend_intergenic: 262827 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 42 predictions persist after filtering for low support