-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_13/scaffold_13_5695454-5924824 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 92272, 92649 Sorry, prediction pasa_asmbl_10878.p1 fails validation. (CAC) CA 92272-92649 GG AGG Valid prediction for snap_scaffold_13-snap.1076-T1 Valid prediction for GlimmerHMM_glimmerT_32429-T1 Valid prediction for GeneMark_model.55443_t Valid prediction for snap_scaffold_13-snap.1090-T1 Valid prediction for snap_scaffold_13-snap.1103-T1 Valid prediction for GeneMark_model.55451_t Valid prediction for snap_scaffold_13-snap.1101-T1 Valid prediction for GeneMark_model.55428_t Valid prediction for pasa_asmbl_10891.p1 Valid prediction for Augustus_model.g21723.t1 Valid prediction for GeneMark_model.55422_t Valid prediction for snap_scaffold_13-snap.1087-T1 Valid prediction for GeneMark_model.55424_t Valid prediction for snap_scaffold_13-snap.1072-T1 Valid prediction for GeneMark_model.55454_t Valid prediction for GeneMark_model.55434_t Valid prediction for GeneMark_model.55458_t Valid prediction for GlimmerHMM_glimmerT_32415-T1 Couldn't classify 83443, 84333 Sorry, prediction pasa_asmbl_10872.p1 fails validation. (GAC) GT 83443-84333 GA AGG Couldn't classify 84868, 86032 Sorry, prediction pasa_asmbl_10873.p1 fails validation. (TCC) CC 84868-86032 GT AGG (TAT) AG 86390-86496 CC GAC -recovered pasa_asmbl_10873.p1, terminal, 86390, 86496 Valid prediction for GeneMark_model.55453_t Valid prediction for GlimmerHMM_glimmerT_32417-T1 Valid prediction for HiQ_model.g21724.t1 Valid prediction for GeneMark_model.55445_t Valid prediction for CodingQuarry_transcript_13014-T1 Valid prediction for GlimmerHMM_glimmerT_32434-T1 Valid prediction for Augustus_model.g21718.t1 Valid prediction for snap_scaffold_13-snap.1088-T1 Valid prediction for HiQ_model.g21727.t1 Valid prediction for snap_scaffold_13-snap.1085-T1 Valid prediction for GlimmerHMM_glimmerT_32426-T1 Valid prediction for CodingQuarry_transcript_13015-T1 Valid prediction for GeneMark_model.55429_t Valid prediction for snap_scaffold_13-snap.1100-T1 Valid prediction for GeneMark_model.55446_t Valid prediction for GeneMark_model.55440_t Valid prediction for snap_scaffold_13-snap.1077-T1 Valid prediction for GlimmerHMM_glimmerT_32427-T1 Valid prediction for CodingQuarry_transcript_13008-T1 Valid prediction for Augustus_model.g21717.t1 Valid prediction for snap_scaffold_13-snap.1098-T1 Valid prediction for GeneMark_model.55452_t Valid prediction for HiQ_model.g21726.t1 Valid prediction for HiQ_model.g21719.t1 Valid prediction for GlimmerHMM_glimmerT_32430-T1 Valid prediction for GeneMark_model.55436_t Valid prediction for GlimmerHMM_glimmerT_32435-T1 Valid prediction for snap_scaffold_13-snap.1091-T1 Couldn't classify 100622, 100686 Sorry, prediction pasa_asmbl_10880.p1 fails validation. (GGA) TA 100622-100686 GT AAG (CTT) AG 101449-101540 GT GGG (TTT) AG 101637-101694 GT AGG (AAA) AG 101956-102113 GT GGG (TGA) AG 102526-103348 GT GGG (AAT) AG 106020-107465 GT CTG (GGA) AG 107988-108152 GT AGG (GCA) AG 108417-108451 GC AGG (GGG) AG 109108-109172 GT GGG (GAG) AG 109313-109449 GT ACG (TAC) AG 109962-110057 GT AGG (CCT) AG 111035-111353 GT AGG (GAT) AG 111755-111820 GT AAG (CTG) AG 112516-113254 GT AGG (ATC) AG 114348-114894 GT AGG (ACT) AG 115797-115929 GT AGG (GAG) AG 117054-117104 GT GGG (GAG) AG 118023-118100 GT AGG (AGG) AG 118764-118911 GT AGG (GGC) AG 119033-119128 GT TGG (AAA) AG 119355-119435 GT AGG (TGG) AG 119712-119889 GT AAG (GTT) AG 120139-120311 GT GAG (TGA) AG 120486-120641 GT AGG (GTC) AG 121863-121999 GT AAG (GCC) AG 122546-122693 GT GTG (CGG) AG 122852-122997 GT AGG (GTG) AG 123336-123511 GT AGG (GAA) AG 123826-123973 GT AAG (GAG) AG 124081-124363 GT AGG (TTG) AG 124590-124741 GT AGG (GTG) AG 125223-125328 GT GGG (GTG) AG 125534-125741 GT CAG (ATG) AG 125857-125990 GT AGG (ATC) AG 126236-126391 GT TGG (CTC) AG 126553-126696 GT AGG (AGA) AG 126804-126925 GT GGG (GAG) AG 127177-127332 GT AGG (AAA) AG 127990-128076 GA AGG -recovered pasa_asmbl_10880.p1, initial, 125857, 125990 add_exon() Sorry, pasa_asmbl_10880.p1 107988-108152-terminal-1 is invalid. -recovered pasa_asmbl_10880.p1, terminal, 107988, 108152 add_exon() Sorry, pasa_asmbl_10880.p1 123336-123511-terminal-2 is invalid. -recovered pasa_asmbl_10880.p1, terminal, 123336, 123511 -recovered pasa_asmbl_10880.p1, terminal, 127990, 128076 -recovered pasa_asmbl_10880.p1, internal, 101449, 101540 -recovered pasa_asmbl_10880.p1, internal, 101637, 101694 -recovered pasa_asmbl_10880.p1, internal, 101956, 102113 -recovered pasa_asmbl_10880.p1, internal, 102526, 103348 -recovered pasa_asmbl_10880.p1, internal, 106020, 107465 -recovered pasa_asmbl_10880.p1, internal, 107988, 108152 -recovered pasa_asmbl_10880.p1, internal, 108417, 108451 -recovered pasa_asmbl_10880.p1, internal, 109108, 109172 -recovered pasa_asmbl_10880.p1, internal, 109313, 109449 -recovered pasa_asmbl_10880.p1, internal, 109962, 110057 -recovered pasa_asmbl_10880.p1, internal, 111035, 111353 -recovered pasa_asmbl_10880.p1, internal, 111755, 111820 -recovered pasa_asmbl_10880.p1, internal, 112516, 113254 -recovered pasa_asmbl_10880.p1, internal, 114348, 114894 -recovered pasa_asmbl_10880.p1, internal, 115797, 115929 -recovered pasa_asmbl_10880.p1, internal, 117054, 117104 -recovered pasa_asmbl_10880.p1, internal, 118023, 118100 -recovered pasa_asmbl_10880.p1, internal, 118764, 118911 -recovered pasa_asmbl_10880.p1, internal, 119033, 119128 -recovered pasa_asmbl_10880.p1, internal, 119355, 119435 -recovered pasa_asmbl_10880.p1, internal, 119712, 119889 -recovered pasa_asmbl_10880.p1, internal, 120139, 120311 -recovered pasa_asmbl_10880.p1, internal, 120486, 120641 -recovered pasa_asmbl_10880.p1, internal, 121863, 121999 -recovered pasa_asmbl_10880.p1, internal, 122546, 122693 -recovered pasa_asmbl_10880.p1, internal, 122852, 122997 -recovered pasa_asmbl_10880.p1, internal, 123336, 123511 -recovered pasa_asmbl_10880.p1, internal, 123826, 123973 -recovered pasa_asmbl_10880.p1, internal, 124081, 124363 -recovered pasa_asmbl_10880.p1, internal, 124590, 124741 -recovered pasa_asmbl_10880.p1, internal, 125223, 125328 -recovered pasa_asmbl_10880.p1, internal, 125534, 125741 -recovered pasa_asmbl_10880.p1, internal, 125857, 125990 -recovered pasa_asmbl_10880.p1, internal, 126236, 126391 -recovered pasa_asmbl_10880.p1, internal, 126553, 126696 -recovered pasa_asmbl_10880.p1, internal, 126804, 126925 -recovered pasa_asmbl_10880.p1, internal, 127177, 127332 Valid prediction for snap_scaffold_13-snap.1104-T1 Valid prediction for snap_scaffold_13-snap.1099-T1 Valid prediction for GlimmerHMM_glimmerT_32424-T1 Valid prediction for snap_scaffold_13-snap.1086-T1 Valid prediction for GeneMark_model.55420_t Valid prediction for GeneMark_model.55455_t Valid prediction for pasa_asmbl_10890.p1 Valid prediction for GlimmerHMM_glimmerT_32437-T1 Valid prediction for pasa_asmbl_10888.p1 Valid prediction for GeneMark_model.55426_t Valid prediction for pasa_asmbl_10884.p1 Valid prediction for GeneMark_model.55442_t Valid prediction for GlimmerHMM_glimmerT_32423-T1 Valid prediction for snap_scaffold_13-snap.1078-T1 Valid prediction for GeneMark_model.55423_t Valid prediction for GeneMark_model.55431_t Valid prediction for CodingQuarry_transcript_13011-T1 Valid prediction for GeneMark_model.55437_t Valid prediction for GlimmerHMM_glimmerT_32438-T1 Valid prediction for GeneMark_model.55459_t Valid prediction for snap_scaffold_13-snap.1074-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 211464, 211580 Sorry, prediction pasa_asmbl_9669.p1 fails validation. (AAA) CA 211464-211580 GT AGG (AGT) AG 212463-212537 GT TGG (GAT) AG 212910-212969 GT GGG (GGT) AG 213641-213844 GT ACG (CTG) AG 214418-214531 GT AGG (CAA) AG 215504-215638 GT AGG (GTG) AG 215929-216046 GT AGG (GCA) AG 216255-216523 GT CGG (GTG) AG 216992-217190 GT TGG (GGG) AG 217566-217675 GT GGG (AGG) AG 217935-218069 GT AGG (CTT) AG 218314-218393 GT AGG (ATG) AG 218547-218656 GT GGG (GCT) AG 218959-219134 GT AGG (GTG) AG 219527-219663 GT AGG (GGA) AG 219903-220053 GT AGG (GGA) AG 220355-220523 GT AGG (GTC) AG 220668-220822 GT TGG (GTC) AG 221482-221605 GT AGG (GTA) AG 222229-222374 GT GGG (ACA) AG 222553-222683 GT AAG (TAA) AG 222787-222888 GT AAG (GGT) AG 223087-223178 GT AGG (GAT) AG 223462-223490 CA AAC add_exon() Sorry, pasa_asmbl_9669.p1 218547-218656-initial-1 is invalid. -recovered pasa_asmbl_9669.p1, initial, 218547, 218656 add_exon() Sorry, pasa_asmbl_9669.p1 221482-221605-terminal-3 is invalid. -recovered pasa_asmbl_9669.p1, terminal, 221482, 221605 -recovered pasa_asmbl_9669.p1, terminal, 223462, 223490 -recovered pasa_asmbl_9669.p1, internal, 212463, 212537 -recovered pasa_asmbl_9669.p1, internal, 212910, 212969 -recovered pasa_asmbl_9669.p1, internal, 213641, 213844 -recovered pasa_asmbl_9669.p1, internal, 214418, 214531 -recovered pasa_asmbl_9669.p1, internal, 215504, 215638 -recovered pasa_asmbl_9669.p1, internal, 215929, 216046 -recovered pasa_asmbl_9669.p1, internal, 216255, 216523 -recovered pasa_asmbl_9669.p1, internal, 216992, 217190 -recovered pasa_asmbl_9669.p1, internal, 217566, 217675 -recovered pasa_asmbl_9669.p1, internal, 217935, 218069 -recovered pasa_asmbl_9669.p1, internal, 218314, 218393 -recovered pasa_asmbl_9669.p1, internal, 218547, 218656 -recovered pasa_asmbl_9669.p1, internal, 218959, 219134 -recovered pasa_asmbl_9669.p1, internal, 219527, 219663 -recovered pasa_asmbl_9669.p1, internal, 219903, 220053 -recovered pasa_asmbl_9669.p1, internal, 220355, 220523 -recovered pasa_asmbl_9669.p1, internal, 220668, 220822 -recovered pasa_asmbl_9669.p1, internal, 221482, 221605 -recovered pasa_asmbl_9669.p1, internal, 222229, 222374 -recovered pasa_asmbl_9669.p1, internal, 222553, 222683 -recovered pasa_asmbl_9669.p1, internal, 222787, 222888 -recovered pasa_asmbl_9669.p1, internal, 223087, 223178 Valid prediction for snap_scaffold_13-snap.1108-T1 Valid prediction for GeneMark_model.55421_t Valid prediction for CodingQuarry_transcript_13012-T1 Valid prediction for pasa_asmbl_9700.p1 Valid prediction for GeneMark_model.55418_t Valid prediction for pasa_asmbl_9670.p1 Valid prediction for GeneMark_model.55425_t Valid prediction for CodingQuarry_transcript_13006-T1 Valid prediction for Augustus_model.g21715.t1 Valid prediction for GlimmerHMM_glimmerT_32420-T1 Couldn't classify 186360, 186436 Sorry, prediction pasa_asmbl_9679.p1 fails validation. (GCC) AG 186360-186436 GT AGG (GTC) AG 186579-186670 GT AGG (ACT) AG 186784-186883 GT TGG (CGA) AG 187048-187133 GT AGG (GGG) AG 187406-187521 GT AGG (GTG) AG 188507-188617 GT AGG (GAC) AG 189201-189272 GT AGG (TCT) AG 189566-189710 GT AGG (ACT) AG 189841-189923 GT AGG (CTG) AG 190084-190236 GT AGG (ATT) AG 190660-190713 GT AGG (GAG) AG 190846-190989 GT TGG (GTG) AG 191762-191854 GT AGG (ATT) AG 191995-192069 TG GAT -recovered pasa_asmbl_9679.p1, terminal, 191995, 192069 -recovered pasa_asmbl_9679.p1, internal, 186360, 186436 -recovered pasa_asmbl_9679.p1, internal, 186579, 186670 -recovered pasa_asmbl_9679.p1, internal, 186784, 186883 -recovered pasa_asmbl_9679.p1, internal, 187048, 187133 -recovered pasa_asmbl_9679.p1, internal, 187406, 187521 -recovered pasa_asmbl_9679.p1, internal, 188507, 188617 -recovered pasa_asmbl_9679.p1, internal, 189201, 189272 -recovered pasa_asmbl_9679.p1, internal, 189566, 189710 -recovered pasa_asmbl_9679.p1, internal, 189841, 189923 -recovered pasa_asmbl_9679.p1, internal, 190084, 190236 -recovered pasa_asmbl_9679.p1, internal, 190660, 190713 -recovered pasa_asmbl_9679.p1, internal, 190846, 190989 -recovered pasa_asmbl_9679.p1, internal, 191762, 191854 Valid prediction for GlimmerHMM_glimmerT_32442-T1 Valid prediction for Augustus_model.g21713.t1 Valid prediction for HiQ_model.g21709.t1 Valid prediction for snap_scaffold_13-snap.1093-T1 Valid prediction for CodingQuarry_transcript_13013-T1 Valid prediction for Augustus_model.g21728.t1 Valid prediction for CodingQuarry_transcript_13005-T1 Valid prediction for HiQ_model.g21722.t1 Valid prediction for pasa_asmbl_9685.p1 Valid prediction for snap_scaffold_13-snap.1080-T1 Valid prediction for GeneMark_model.55457_t Valid prediction for GeneMark_model.55427_t Valid prediction for GlimmerHMM_glimmerT_32432-T1 Valid prediction for GlimmerHMM_glimmerT_32419-T1 Valid prediction for GeneMark_model.55432_t Couldn't classify 32040, 32203 Couldn't classify 34937, 35013 Sorry, prediction pasa_asmbl_9703.p1 fails validation. (AAG) AC 32040-32203 GT GGG (ACA) AG 32508-32592 GT AGG (GTG) AG 32692-32857 GT TAG (GTG) AG 33227-33378 GT AGG (CTG) AG 33634-33762 GT AGG (TTG) AG 33943-34101 GT AGG (ATC) AG 34308-34461 GT CGG (GTG) AG 34545-34632 GT AGG (GAT) AG 34712-34752 GT AGG (TGG) AG 34937-35013 CA TGC -recovered pasa_asmbl_9703.p1, terminal, 34712, 34752 -recovered pasa_asmbl_9703.p1, internal, 32508, 32592 -recovered pasa_asmbl_9703.p1, internal, 32692, 32857 -recovered pasa_asmbl_9703.p1, internal, 33227, 33378 -recovered pasa_asmbl_9703.p1, internal, 33634, 33762 -recovered pasa_asmbl_9703.p1, internal, 33943, 34101 -recovered pasa_asmbl_9703.p1, internal, 34308, 34461 -recovered pasa_asmbl_9703.p1, internal, 34545, 34632 -recovered pasa_asmbl_9703.p1, internal, 34712, 34752 Valid prediction for snap_scaffold_13-snap.1079-T1 Valid prediction for snap_scaffold_13-snap.1089-T1 Valid prediction for snap_scaffold_13-snap.1095-T1 Valid prediction for pasa_asmbl_9666.p1 Valid prediction for GlimmerHMM_glimmerT_32428-T1 Valid prediction for snap_scaffold_13-snap.1083-T1 Valid prediction for GlimmerHMM_glimmerT_32439-T1 Valid prediction for snap_scaffold_13-snap.1084-T1 Valid prediction for GeneMark_model.55456_t Valid prediction for Augustus_model.g21731.t1 Valid prediction for GlimmerHMM_glimmerT_32421-T1 Valid prediction for snap_scaffold_13-snap.1071-T1 Valid prediction for GeneMark_model.55448_t Valid prediction for GeneMark_model.55460_t Valid prediction for HiQ_model.g21710.t1 Valid prediction for Augustus_model.g21729.t1 Couldn't classify 169768, 169936 Sorry, prediction pasa_asmbl_9684.p1 fails validation. (CCC) GA 169768-169936 GT AAG (GCT) AG 171082-171275 GT CGG (CCA) AG 172328-172434 GT TGG (TAA) AG 173030-173135 GT TGG (TGG) AG 173498-173550 GT GTG (ATC) AG 173958-174048 GT TAG (GCT) AG 174314-174457 AC AGA -recovered pasa_asmbl_9684.p1, terminal, 174314, 174457 -recovered pasa_asmbl_9684.p1, internal, 171082, 171275 -recovered pasa_asmbl_9684.p1, internal, 172328, 172434 -recovered pasa_asmbl_9684.p1, internal, 173030, 173135 -recovered pasa_asmbl_9684.p1, internal, 173498, 173550 -recovered pasa_asmbl_9684.p1, internal, 173958, 174048 Valid prediction for snap_scaffold_13-snap.1096-T1 Couldn't classify 1267, 1383 Sorry, prediction pasa_asmbl_9708.p1 fails validation. (GTG) CA 1267-1383 GT TGG (GGC) AG 1635-1919 GT TGG (AAC) AG 2328-2405 GT AGG (GGG) AG 2519-2747 GT CGG (GTA) AG 3797-3977 GT AGG (CAT) AG 4222-4420 GT AGG (GTG) AG 4633-4722 GT CTG (AAT) AG 5138-5149 CG GAC -recovered pasa_asmbl_9708.p1, terminal, 5138, 5149 -recovered pasa_asmbl_9708.p1, internal, 1635, 1919 -recovered pasa_asmbl_9708.p1, internal, 2328, 2405 -recovered pasa_asmbl_9708.p1, internal, 2519, 2747 -recovered pasa_asmbl_9708.p1, internal, 3797, 3977 -recovered pasa_asmbl_9708.p1, internal, 4222, 4420 -recovered pasa_asmbl_9708.p1, internal, 4633, 4722 Valid prediction for GlimmerHMM_glimmerT_32433-T1 Valid prediction for CodingQuarry_transcript_13009-T1 Valid prediction for Augustus_model.g21730.t1 Valid prediction for CodingQuarry_transcript_13010-T1 Valid prediction for snap_scaffold_13-snap.1106-T1 Valid prediction for GeneMark_model.55433_t Valid prediction for GeneMark_model.55447_t Valid prediction for Augustus_model.g21720.t1 Valid prediction for GeneMark_model.55435_t Valid prediction for Augustus_model.g21712.t1 Valid prediction for snap_scaffold_13-snap.1094-T1 Couldn't classify 28613, 28629 Couldn't classify 29338, 29403 Sorry, prediction pasa_asmbl_10346.p1 fails validation. (GGA) AT 28613-28629 GT AAG (GTC) AG 28903-29137 GT AGG (GTG) AG 29338-29403 AT GGA -recovered pasa_asmbl_10346.p1, internal, 28903, 29137 Couldn't classify 165133, 165144 Sorry, prediction CodingQuarry_transcript_13007-T1 fails validation. (ATG) AC 163131-163242 GT CGG (GTA) AG 163574-163599 GT AGG (GTC) AG 163778-163857 GT TGG (GTA) AG 163952-164089 GT AGG (TGC) AG 164199-164290 GT CGG (TGG) AG 164828-164964 GT TTG (CTG) GT 165133-165144 CA GAC -recovered CodingQuarry_transcript_13007-T1, initial, 163131, 163242 -recovered CodingQuarry_transcript_13007-T1, internal, 163574, 163599 -recovered CodingQuarry_transcript_13007-T1, internal, 163778, 163857 -recovered CodingQuarry_transcript_13007-T1, internal, 163952, 164089 -recovered CodingQuarry_transcript_13007-T1, internal, 164199, 164290 -recovered CodingQuarry_transcript_13007-T1, internal, 164828, 164964 Valid prediction for GeneMark_model.55430_t Valid prediction for GeneMark_model.55439_t Couldn't classify 197746, 197950 Couldn't classify 201467, 201512 Sorry, prediction pasa_asmbl_9678.p1 fails validation. (CCT) TC 197746-197950 GT AGG (GGC) AG 199190-199356 GT CTG (GTG) AG 200409-200622 GT GGG (TGC) AG 200872-201001 GT AGG (CAA) AG 201467-201512 GC AGG -recovered pasa_asmbl_9678.p1, internal, 199190, 199356 -recovered pasa_asmbl_9678.p1, internal, 200409, 200622 -recovered pasa_asmbl_9678.p1, internal, 200872, 201001 -recovered pasa_asmbl_9678.p1, internal, 201467, 201512 Valid prediction for GeneMark_model.55419_t Valid prediction for HiQ_model.g21714.t1 Couldn't classify 183061, 183199 Couldn't classify 185818, 185897 Sorry, prediction pasa_asmbl_9681.p1 fails validation. (GCG) CA 183061-183199 GT AGG (AGG) AG 184105-184404 GT CAG (CTC) AG 184630-184744 GT GGG (TGT) AG 184846-184938 GT AAG (GGT) AG 185097-185153 GT AGG (GCT) AG 185265-185323 GT TGG (AGG) AG 185507-185620 GT CGG (GGC) AG 185818-185897 CA ACC -recovered pasa_asmbl_9681.p1, internal, 184105, 184404 -recovered pasa_asmbl_9681.p1, internal, 184630, 184744 -recovered pasa_asmbl_9681.p1, internal, 184846, 184938 -recovered pasa_asmbl_9681.p1, internal, 185097, 185153 -recovered pasa_asmbl_9681.p1, internal, 185265, 185323 -recovered pasa_asmbl_9681.p1, internal, 185507, 185620 Valid prediction for snap_scaffold_13-snap.1092-T1 Valid prediction for Augustus_model.g21711.t1 Valid prediction for snap_scaffold_13-snap.1107-T1 Valid prediction for pasa_asmbl_9691.p1 Valid prediction for GlimmerHMM_glimmerT_32436-T1 Valid prediction for snap_scaffold_13-snap.1073-T1 Valid prediction for GlimmerHMM_glimmerT_32440-T1 Couldn't classify 35402, 35553 Sorry, prediction pasa_asmbl_9702.p1 fails validation. (GTT) AG 35402-35553 GT AGG (GTC) AG 35714-35886 GT CAG (CGA) AG 36163-36323 GT AGG (GCC) AG 36824-36954 GT AGG (GGG) AG 37313-37442 GT AGG (AAA) AG 37613-37748 GT AGG (ATA) AG 37888-38026 GT GCG (GTT) AG 38139-38196 GT TGG (GAC) AG 38412-38571 GT CAG (GGA) AG 38832-38971 GT AGG (AGA) AG 39050-39218 GT CGG (GTT) AG 39452-39590 GT AAG (TGT) AG 39718-39835 GT GGG (TTC) AG 40079-40246 CA GAC -recovered pasa_asmbl_9702.p1, terminal, 40079, 40246 -recovered pasa_asmbl_9702.p1, internal, 35402, 35553 -recovered pasa_asmbl_9702.p1, internal, 35714, 35886 -recovered pasa_asmbl_9702.p1, internal, 36163, 36323 -recovered pasa_asmbl_9702.p1, internal, 36824, 36954 -recovered pasa_asmbl_9702.p1, internal, 37313, 37442 -recovered pasa_asmbl_9702.p1, internal, 37613, 37748 -recovered pasa_asmbl_9702.p1, internal, 37888, 38026 -recovered pasa_asmbl_9702.p1, internal, 38139, 38196 -recovered pasa_asmbl_9702.p1, internal, 38412, 38571 -recovered pasa_asmbl_9702.p1, internal, 38832, 38971 -recovered pasa_asmbl_9702.p1, internal, 39050, 39218 -recovered pasa_asmbl_9702.p1, internal, 39452, 39590 -recovered pasa_asmbl_9702.p1, internal, 39718, 39835 Valid prediction for GlimmerHMM_glimmerT_32422-T1 Valid prediction for GlimmerHMM_glimmerT_32441-T1 Valid prediction for GlimmerHMM_glimmerT_32414-T1 Valid prediction for GlimmerHMM_glimmerT_32418-T1 Valid prediction for snap_scaffold_13-snap.1081-T1 Valid prediction for GlimmerHMM_glimmerT_32416-T1 Valid prediction for GeneMark_model.55438_t Valid prediction for GeneMark_model.55444_t Valid prediction for HiQ_model.g21721.t1 Valid prediction for GlimmerHMM_glimmerT_32431-T1 Valid prediction for snap_scaffold_13-snap.1082-T1 Valid prediction for GeneMark_model.55441_t Valid prediction for HiQ_model.g21725.t1 Valid prediction for HiQ_model.g21716.t1 Valid prediction for snap_scaffold_13-snap.1075-T1 Valid prediction for snap_scaffold_13-snap.1102-T1 Valid prediction for pasa_asmbl_9692.p1 Valid prediction for GlimmerHMM_glimmerT_32425-T1 Valid prediction for snap_scaffold_13-snap.1097-T1 Valid prediction for snap_scaffold_13-snap.1105-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14352, rend_intergenic: 5882 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 34428, rend_intergenic: 22928 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 44813, rend_intergenic: 37303 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 101698, rend_intergenic: 93401 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128076, rend_intergenic: 112795 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 229371 -exon list size: 746 building trellis 0.1 0.3 0.4 0.5 0.7 0.8 0.9 1.1 1.2 1.3 1.5 1.6 1.7 1.9 2.0 2.1 2.3 2.4 2.5 2.7 2.8 2.9 3.1 3.2 3.3 3.5 3.6 3.7 3.9 4.0 4.1 4.3 4.4 4.5 4.7 4.8 4.9 5.1 5.2 5.3 5.5 5.6 5.7 5.9 6.0 6.1 6.3 6.4 6.6 6.7 6.8 7.0 7.1 7.2 7.4 7.5 7.6 7.8 7.9 8.0 8.2 8.3 8.4 8.6 8.7 8.8 9.0 9.1 9.2 9.4 9.5 9.6 9.8 9.9 10.0 10.2 10.3 10.4 10.6 10.7 10.8 11.0 11.1 11.2 11.4 11.5 11.6 11.8 11.9 12.0 12.2 12.3 12.4 12.6 12.7 12.8 13.0 13.1 13.2 13.4 13.5 13.6 13.8 13.9 14.0 14.2 14.3 14.4 14.6 14.7 14.8 15.0 15.1 15.2 15.4 15.5 15.6 15.8 15.9 16.0 16.2 16.3 16.4 16.6 16.7 16.8 17.0 17.1 17.2 17.4 17.5 17.6 17.8 17.9 18.0 18.2 18.3 18.4 18.6 18.7 18.9 19.0 19.1 19.3 19.4 19.5 19.7 19.8 19.9 20.1 20.2 20.3 20.5 20.6 20.7 20.9 21.0 21.1 21.3 21.4 21.5 21.7 21.8 21.9 22.1 22.2 22.3 22.5 22.6 22.7 22.9 23.0 23.1 23.3 23.4 23.5 23.7 23.8 23.9 24.1 24.2 24.3 24.5 24.6 24.7 24.9 25.0 25.1 25.3 25.4 25.5 25.7 25.8 25.9 26.1 26.2 26.3 26.5 26.6 26.7 26.9 27.0 27.1 27.3 27.4 27.5 27.7 27.8 27.9 28.1 28.2 28.3 28.5 28.6 28.7 28.9 29.0 29.1 29.3 29.4 29.5 29.7 29.8 29.9 30.1 30.2 30.3 30.5 30.6 30.7 30.9 31.0 31.1 31.3 31.4 31.6 31.7 31.8 32.0 32.1 32.2 32.4 32.5 32.6 32.8 32.9 33.0 33.2 33.3 33.4 33.6 33.7 33.8 34.0 34.1 34.2 34.4 34.5 34.6 34.8 34.9 35.0 35.2 35.3 35.4 35.6 35.7 35.8 36.0 36.1 36.2 36.4 36.5 36.6 36.8 36.9 37.0 37.2 37.3 37.4 37.6 37.7 37.8 38.0 38.1 38.2 38.4 38.5 38.6 38.8 38.9 39.0 39.2 39.3 39.4 39.6 39.7 39.8 40.0 40.1 40.2 40.4 40.5 40.6 40.8 40.9 41.0 41.2 41.3 41.4 41.6 41.7 41.8 42.0 42.1 42.2 42.4 42.5 42.6 42.8 42.9 43.0 43.2 43.3 43.4 43.6 43.7 43.9 44.0 44.1 44.3 44.4 44.5 44.7 44.8 44.9 45.1 45.2 45.3 45.5 45.6 45.7 45.9 46.0 46.1 46.3 46.4 46.5 46.7 46.8 46.9 47.1 47.2 47.3 47.5 47.6 47.7 47.9 48.0 48.1 48.3 48.4 48.5 48.7 48.8 48.9 49.1 49.2 49.3 49.5 49.6 49.7 49.9 50.0 50.1 50.3 50.4 50.5 50.7 50.8 50.9 51.1 51.2 51.3 51.5 51.6 51.7 51.9 52.0 52.1 52.3 52.4 52.5 52.7 52.8 52.9 53.1 53.2 53.3 53.5 53.6 53.7 53.9 54.0 54.1 54.3 54.4 54.5 54.7 54.8 54.9 55.1 55.2 55.3 55.5 55.6 55.7 55.9 56.0 56.1 56.3 56.4 56.6 56.7 56.8 57.0 57.1 57.2 57.4 57.5 57.6 57.8 57.9 58.0 58.2 58.3 58.4 58.6 58.7 58.8 59.0 59.1 59.2 59.4 59.5 59.6 59.8 59.9 60.0 60.2 60.3 60.4 60.6 60.7 60.8 61.0 61.1 61.2 61.4 61.5 61.6 61.8 61.9 62.0 62.2 62.3 62.4 62.6 62.7 62.8 63.0 63.1 63.2 63.4 63.5 63.6 63.8 63.9 64.0 64.2 64.3 64.4 64.6 64.7 64.8 65.0 65.1 65.2 65.4 65.5 65.6 65.8 65.9 66.0 66.2 66.3 66.4 66.6 66.7 66.8 67.0 67.1 67.2 67.4 67.5 67.6 67.8 67.9 68.0 68.2 68.3 68.4 68.6 68.7 68.9 69.0 69.1 69.3 69.4 69.5 69.7 69.8 69.9 70.1 70.2 70.3 70.5 70.6 70.7 70.9 71.0 71.1 71.3 71.4 71.5 71.7 71.8 71.9 72.1 72.2 72.3 72.5 72.6 72.7 72.9 73.0 73.1 73.3 73.4 73.5 73.7 73.8 73.9 74.1 74.2 74.3 74.5 74.6 74.7 74.9 75.0 75.1 75.3 75.4 75.5 75.7 75.8 75.9 76.1 76.2 76.3 76.5 76.6 76.7 76.9 77.0 77.1 77.3 77.4 77.5 77.7 77.8 77.9 78.1 78.2 78.3 78.5 78.6 78.7 78.9 79.0 79.1 79.3 79.4 79.5 79.7 79.8 79.9 80.1 80.2 80.3 80.5 80.6 80.7 80.9 81.0 81.1 81.3 81.4 81.6 81.7 81.8 82.0 82.1 82.2 82.4 82.5 82.6 82.8 82.9 83.0 83.2 83.3 83.4 83.6 83.7 83.8 84.0 84.1 84.2 84.4 84.5 84.6 84.8 84.9 85.0 85.2 85.3 85.4 85.6 85.7 85.8 86.0 86.1 86.2 86.4 86.5 86.6 86.8 86.9 87.0 87.2 87.3 87.4 87.6 87.7 87.8 88.0 88.1 88.2 88.4 88.5 88.6 88.8 88.9 89.0 89.2 89.3 89.4 89.6 89.7 89.8 90.0 90.1 90.2 90.4 90.5 90.6 90.8 90.9 91.0 91.2 91.3 91.4 91.6 91.7 91.8 92.0 92.1 92.2 92.4 92.5 92.6 92.8 92.9 93.0 93.2 93.3 93.4 93.6 93.7 93.9 94.0 94.1 94.3 94.4 94.5 94.7 94.8 94.9 95.1 95.2 95.3 95.5 95.6 95.7 95.9 96.0 96.1 96.3 96.4 96.5 96.7 96.8 96.9 97.1 97.2 97.3 97.5 97.6 97.7 97.9 98.0 98.1 98.3 98.4 98.5 98.7 98.8 98.9 99.1 99.2 99.3 99.5 99.6 99.7 99.9 -found 33 predictions from path traversal Error with prediction: snap lend_intergenic: 14352, rend_intergenic: 5882 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 34428, rend_intergenic: 22928 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 44813, rend_intergenic: 37303 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 101698, rend_intergenic: 93401 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128076, rend_intergenic: 112795 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 29 predictions persist after filtering for low support