-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_13/scaffold_13_5484966-5697267

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g21696.t1
Valid prediction for GlimmerHMM_glimmerT_32394-T1
Valid prediction for GlimmerHMM_glimmerT_32386-T1
Valid prediction for pasa_asmbl_10837.p1
Valid prediction for GlimmerHMM_glimmerT_32407-T1
Couldn't classify 108228, 108285
Couldn't classify 109096, 109344
Sorry, prediction pasa_asmbl_11629.p1 fails validation.
(TTG)	 AA	108228-108285	GT	TGG
(TAG)	 AG	108680-108777	GT	AGG
(CCT)	 AG	109096-109344	AG	CGA
-recovered pasa_asmbl_11629.p1, internal, 108680, 108777
Valid prediction for GlimmerHMM_glimmerT_32410-T1
Valid prediction for GeneMark_model.55406_t
Valid prediction for GeneMark_model.55385_t
Valid prediction for GeneMark_model.55386_t
Valid prediction for snap_scaffold_13-snap.1051-T1
Valid prediction for GeneMark_model.55389_t
Valid prediction for Augustus_model.g21703.t1
Valid prediction for GeneMark_model.55407_t
Couldn't classify 73878, 73896
Couldn't classify 74688, 74829
Sorry, prediction pasa_asmbl_11582.p1 fails validation.
(AAG)	 TC	73878-73896	GT	TGG
(AAA)	 AG	74207-74342	GT	AGG
(GCT)	 AG	74688-74829	GC	GGG
-recovered pasa_asmbl_11582.p1, internal, 74207, 74342
-recovered pasa_asmbl_11582.p1, internal, 74688, 74829
Valid prediction for Augustus_model.g21684.t1
Valid prediction for Augustus_model.g21695.t1
Valid prediction for GeneMark_model.55390_t
Valid prediction for snap_scaffold_13-snap.1031-T1
Valid prediction for CodingQuarry_transcript_12994-T1
Valid prediction for GeneMark_model.55377_t
Valid prediction for CodingQuarry_transcript_13000-T1
Valid prediction for snap_scaffold_13-snap.1061-T1
Valid prediction for snap_scaffold_13-snap.1067-T1
Valid prediction for snap_scaffold_13-snap.1041-T1
Valid prediction for GeneMark_model.55404_t
Valid prediction for snap_scaffold_13-snap.1048-T1
Valid prediction for GlimmerHMM_glimmerT_32388-T1
Valid prediction for GeneMark_model.55375_t
Valid prediction for GlimmerHMM_glimmerT_32399-T1
Valid prediction for HiQ_model.g21692.t1
Couldn't classify 102696, 102933
Sorry, prediction pasa_asmbl_10860.p1 fails validation.
(CAA)	 CT	102696-102933	GT	AGG
(GTA)	 AG	103084-104072	GG	AAG
-recovered pasa_asmbl_10860.p1, terminal, 103084, 104072
Valid prediction for GeneMark_model.55384_t
Valid prediction for CodingQuarry_transcript_12997-T1
Valid prediction for GlimmerHMM_glimmerT_32413-T1
Valid prediction for GlimmerHMM_glimmerT_32403-T1
Couldn't classify 61776, 61854
Sorry, prediction pasa_asmbl_10853.p1 fails validation.
(CCC)	 TT	61776-61854	GT	AAG
(GTG)	 AG	62505-62606	GT	GTG
(CAT)	 AG	62711-62834	GT	AGG
(GCC)	 AG	62970-63091	GT	AGG
(GTG)	 AG	63210-63355	GT	AGG
(TGC)	 AG	63542-63683	GT	AGG
(TGA)	 AG	63839-63951	GT	GGG
(CTG)	 AG	64242-64394	GT	GGG
(GAA)	 AG	64597-64701	GT	AGG
(GTA)	 AG	64982-65059	GC	AGG
(GTG)	 AG	65175-65344	GT	AAG
(ATA)	 AG	65454-65556	GT	AGG
(GCT)	 AG	65748-65846	GT	TGG
(GTC)	 AG	66165-66252	GT	GAG
(AAT)	 AG	66572-66741	GT	AGG
(CTC)	 AG	66898-67110	GT	AGG
(ATG)	 AG	67299-67421	TG	GAT
add_exon() Sorry, pasa_asmbl_10853.p1 66165-66252-terminal-3 is invalid.
-recovered pasa_asmbl_10853.p1, terminal, 66165, 66252
-recovered pasa_asmbl_10853.p1, terminal, 67299, 67421
-recovered pasa_asmbl_10853.p1, internal, 62505, 62606
-recovered pasa_asmbl_10853.p1, internal, 62711, 62834
-recovered pasa_asmbl_10853.p1, internal, 62970, 63091
-recovered pasa_asmbl_10853.p1, internal, 63210, 63355
-recovered pasa_asmbl_10853.p1, internal, 63542, 63683
-recovered pasa_asmbl_10853.p1, internal, 63839, 63951
-recovered pasa_asmbl_10853.p1, internal, 64242, 64394
-recovered pasa_asmbl_10853.p1, internal, 64597, 64701
-recovered pasa_asmbl_10853.p1, internal, 64982, 65059
-recovered pasa_asmbl_10853.p1, internal, 65175, 65344
-recovered pasa_asmbl_10853.p1, internal, 65454, 65556
-recovered pasa_asmbl_10853.p1, internal, 65748, 65846
-recovered pasa_asmbl_10853.p1, internal, 66165, 66252
-recovered pasa_asmbl_10853.p1, internal, 66572, 66741
-recovered pasa_asmbl_10853.p1, internal, 66898, 67110
Couldn't classify 31037, 31221
Couldn't classify 32891, 32925
Sorry, prediction pasa_asmbl_10844.p1 fails validation.
(CTC)	 CC	31037-31221	GT	AGG
(GGT)	 AG	31413-31514	GT	CTG
(TAT)	 AG	31701-31888	GT	CTG
(CTC)	 AG	32066-32206	GT	AGG
(ATG)	 AG	32340-32395	GT	AGG
(GGT)	 AG	32594-32720	GT	CAG
(TCA)	 AG	32891-32925	CC	ACC
-recovered pasa_asmbl_10844.p1, initial, 32340, 32395
-recovered pasa_asmbl_10844.p1, internal, 31413, 31514
-recovered pasa_asmbl_10844.p1, internal, 31701, 31888
-recovered pasa_asmbl_10844.p1, internal, 32066, 32206
-recovered pasa_asmbl_10844.p1, internal, 32340, 32395
-recovered pasa_asmbl_10844.p1, internal, 32594, 32720
Valid prediction for GlimmerHMM_glimmerT_32406-T1
Valid prediction for snap_scaffold_13-snap.1030-T1
Valid prediction for HiQ_model.g21693.t1
Valid prediction for Augustus_model.g21685.t1
Valid prediction for GlimmerHMM_glimmerT_32400-T1
Valid prediction for GlimmerHMM_glimmerT_32404-T1
Valid prediction for snap_scaffold_13-snap.1040-T1
Valid prediction for CodingQuarry_transcript_12999-T1
Valid prediction for GeneMark_model.55396_t
Valid prediction for snap_scaffold_13-snap.1039-T1
Valid prediction for snap_scaffold_13-snap.1036-T1
Valid prediction for pasa_asmbl_10849.p1
Valid prediction for Augustus_model.g21697.t1
Valid prediction for snap_scaffold_13-snap.1044-T1
Valid prediction for snap_scaffold_13-snap.1055-T1
Valid prediction for GeneMark_model.55387_t
Valid prediction for snap_scaffold_13-snap.1056-T1
Valid prediction for GeneMark_model.55380_t
Valid prediction for GlimmerHMM_glimmerT_32396-T1
Valid prediction for GeneMark_model.55414_t
Valid prediction for GeneMark_model.55412_t
Valid prediction for snap_scaffold_13-snap.1058-T1
Valid prediction for snap_scaffold_13-snap.1043-T1
Valid prediction for Augustus_model.g21704.t1
Valid prediction for GlimmerHMM_glimmerT_32385-T1
Valid prediction for GlimmerHMM_glimmerT_32395-T1
Valid prediction for Augustus_model.g21701.t1
Valid prediction for snap_scaffold_13-snap.1052-T1
Valid prediction for HiQ_model.g21694.t1
Valid prediction for GlimmerHMM_glimmerT_32401-T1
Valid prediction for Augustus_model.g21706.t1
Valid prediction for GlimmerHMM_glimmerT_32393-T1
Valid prediction for GlimmerHMM_glimmerT_32390-T1
Valid prediction for GeneMark_model.55410_t
Couldn't classify 100313, 101932
Sorry, prediction pasa_asmbl_10859.p1 fails validation.
(TCC)	 GT	100313-101932	AA	AAA
Valid prediction for GeneMark_model.55383_t
Valid prediction for HiQ_model.g21687.t1
Couldn't classify 27977, 28088
Couldn't classify 30415, 30597
Sorry, prediction pasa_asmbl_10842.p1 fails validation.
(CCG)	 CG	27977-28088	GT	TGG
(ACA)	 AG	29202-29362	GT	AGG
(GTG)	 AG	29612-30115	GT	AGG
(ATG)	 AG	30415-30597	AG	TCA
-recovered pasa_asmbl_10842.p1, internal, 29202, 29362
-recovered pasa_asmbl_10842.p1, internal, 29612, 30115
Valid prediction for snap_scaffold_13-snap.1070-T1
Valid prediction for snap_scaffold_13-snap.1033-T1
Valid prediction for snap_scaffold_13-snap.1057-T1
Valid prediction for GeneMark_model.55417_t
Couldn't classify 45814, 45886
Sorry, prediction pasa_asmbl_10847.p1 fails validation.
(AAA)	 CT	45814-45886	GT	CAG
(GTG)	 AG	46610-46704	GT	AAG
(CCC)	 AG	47198-47360	GT	GGG
(GCA)	 AG	47485-47570	GT	AGG
(AGT)	 AG	47660-47833	GT	AGG
(TAC)	 AG	48132-48299	GT	AGG
(TTA)	 AG	48401-48445	GT	CGG
(CCA)	 AG	48568-48654	TC	GAT
-recovered pasa_asmbl_10847.p1, terminal, 48568, 48654
-recovered pasa_asmbl_10847.p1, internal, 46610, 46704
-recovered pasa_asmbl_10847.p1, internal, 47198, 47360
-recovered pasa_asmbl_10847.p1, internal, 47485, 47570
-recovered pasa_asmbl_10847.p1, internal, 47660, 47833
-recovered pasa_asmbl_10847.p1, internal, 48132, 48299
-recovered pasa_asmbl_10847.p1, internal, 48401, 48445
Valid prediction for Augustus_model.g21700.t1
Valid prediction for pasa_asmbl_10851.p1
Couldn't classify 109495, 110301
Sorry, prediction pasa_asmbl_10864.p1 fails validation.
(GAC)	 GA	109495-110301	AT	AAA
Couldn't classify 77696, 77825
Sorry, prediction pasa_asmbl_10857.p1 fails validation.
(TCA)	 GA	77696-77825	GT	TGG
(AAG)	 AG	78022-78113	GT	GGG
(ATG)	 AG	78254-78292	GT	AGG
(AAA)	 AG	78834-78866	GT	ATG
(GGA)	 AG	79010-79081	GA	GAG
-recovered pasa_asmbl_10857.p1, initial, 78254, 78292
-recovered pasa_asmbl_10857.p1, terminal, 79010, 79081
-recovered pasa_asmbl_10857.p1, internal, 78022, 78113
-recovered pasa_asmbl_10857.p1, internal, 78254, 78292
-recovered pasa_asmbl_10857.p1, internal, 78834, 78866
Valid prediction for GeneMark_model.55399_t
Valid prediction for HiQ_model.g21690.t1
Valid prediction for snap_scaffold_13-snap.1062-T1
Valid prediction for snap_scaffold_13-snap.1066-T1
Couldn't classify 106627, 107315
Sorry, prediction pasa_asmbl_10862.p1 fails validation.
(ATG)	 GA	105911-106385	GT	TGG
(GCA)	 AG	106627-107315	TC	CCT
-recovered pasa_asmbl_10862.p1, initial, 105911, 106385
Valid prediction for snap_scaffold_13-snap.1050-T1
Valid prediction for GeneMark_model.55379_t
Valid prediction for GeneMark_model.55392_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_13-snap.1042-T1
Valid prediction for snap_scaffold_13-snap.1046-T1
Valid prediction for Augustus_model.g21691.t1
Valid prediction for pasa_asmbl_9661.p1
Valid prediction for GlimmerHMM_glimmerT_32412-T1
Valid prediction for snap_scaffold_13-snap.1038-T1
Valid prediction for GeneMark_model.55395_t
Valid prediction for GlimmerHMM_glimmerT_32411-T1
Valid prediction for pasa_asmbl_10343.p1
Valid prediction for GeneMark_model.55403_t
Valid prediction for snap_scaffold_13-snap.1049-T1
Valid prediction for GeneMark_model.55398_t
Valid prediction for GeneMark_model.55394_t
Valid prediction for snap_scaffold_13-snap.1063-T1
Valid prediction for snap_scaffold_13-snap.1037-T1
Valid prediction for GeneMark_model.55402_t
Valid prediction for Augustus_model.g21689.t1
Valid prediction for GeneMark_model.55415_t
Valid prediction for GeneMark_model.55409_t
Valid prediction for GlimmerHMM_glimmerT_32387-T1
Valid prediction for GlimmerHMM_glimmerT_32409-T1
Valid prediction for snap_scaffold_13-snap.1059-T1
Valid prediction for Augustus_model.g21707.t1
Valid prediction for GlimmerHMM_glimmerT_32408-T1
Valid prediction for snap_scaffold_13-snap.1032-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.55397_t
Valid prediction for pasa_asmbl_9658.p1
Valid prediction for snap_scaffold_13-snap.1068-T1
Valid prediction for GeneMark_model.55378_t
Valid prediction for snap_scaffold_13-snap.1034-T1
Valid prediction for pasa_asmbl_9654.p1
Valid prediction for snap_scaffold_13-snap.1060-T1
Valid prediction for GlimmerHMM_glimmerT_32405-T1
Valid prediction for GlimmerHMM_glimmerT_32391-T1
Valid prediction for GeneMark_model.55376_t
Valid prediction for GeneMark_model.55408_t
Valid prediction for snap_scaffold_13-snap.1035-T1
Valid prediction for GeneMark_model.55401_t
Valid prediction for GeneMark_model.55388_t
Valid prediction for HiQ_model.g21702.t1
Valid prediction for GeneMark_model.55400_t
Valid prediction for GeneMark_model.55405_t
Valid prediction for Augustus_model.g21686.t1
Valid prediction for GlimmerHMM_glimmerT_32392-T1
Valid prediction for snap_scaffold_13-snap.1047-T1
Valid prediction for GlimmerHMM_glimmerT_32397-T1
Valid prediction for CodingQuarry_transcript_13002-T1
Valid prediction for snap_scaffold_13-snap.1064-T1
Valid prediction for snap_scaffold_13-snap.1053-T1
Valid prediction for GeneMark_model.55391_t
Valid prediction for HiQ_model.g21688.t1
Valid prediction for GeneMark_model.55381_t
Valid prediction for GeneMark_model.55393_t
Valid prediction for GeneMark_model.55413_t
Valid prediction for snap_scaffold_13-snap.1054-T1
Valid prediction for CodingQuarry_transcript_13003-T1
Valid prediction for Augustus_model.g21705.t1
Valid prediction for GeneMark_model.55416_t
Valid prediction for snap_scaffold_13-snap.1069-T1
Valid prediction for snap_scaffold_13-snap.1045-T1
Valid prediction for Augustus_model.g21708.t1
Valid prediction for GlimmerHMM_glimmerT_32402-T1
Couldn't classify 200415, 200554
Couldn't classify 200924, 201058
Sorry, prediction pasa_asmbl_10396.p1 fails validation.
(GGC)	 AA	200415-200554	GT	GGG
(GCT)	 AG	200693-200756	GT	AGG
(GCG)	 AG	200924-201058	GT	AGG
-recovered pasa_asmbl_10396.p1, internal, 200693, 200756
-recovered pasa_asmbl_10396.p1, internal, 200924, 201058
Valid prediction for HiQ_model.g21698.t1
Valid prediction for HiQ_model.g21699.t1
Valid prediction for GlimmerHMM_glimmerT_32389-T1
Valid prediction for snap_scaffold_13-snap.1065-T1
Valid prediction for CodingQuarry_transcript_13001-T1
Valid prediction for GeneMark_model.55411_t
Valid prediction for CodingQuarry_transcript_12995-T1
Valid prediction for GlimmerHMM_glimmerT_32398-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9838, rend_intergenic: 9259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87617, rend_intergenic: 83441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101932, rend_intergenic: 98388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122731, rend_intergenic: 121105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145177, rend_intergenic: 143530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168630, rend_intergenic: 147374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187705, rend_intergenic: 176710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190846, rend_intergenic: 188131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202981, rend_intergenic: 195269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 212302
-exon list size: 733


building trellis

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49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.5    
50.6    
50.7    
50.9    
51.0    
51.2    
51.3    
51.4    
51.6    
51.7    
51.8    
52.0    
52.1    
52.2    
52.4    
52.5    
52.7    
52.8    
52.9    
53.1    
53.2    
53.3    
53.5    
53.6    
53.7    
53.9    
54.0    
54.1    
54.3    
54.4    
54.6    
54.7    
54.8    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.8    
55.9    
56.1    
56.2    
56.3    
56.5    
56.6    
56.7    
56.9    
57.0    
57.1    
57.3    
57.4    
57.6    
57.7    
57.8    
58.0    
58.1    
58.2    
58.4    
58.5    
58.6    
58.8    
58.9    
59.0    
59.2    
59.3    
59.5    
59.6    
59.7    
59.9    
60.0    
60.1    
60.3    
60.4    
60.5    
60.7    
60.8    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.6    
62.7    
62.9    
63.0    
63.1    
63.3    
63.4    
63.5    
63.7    
63.8    
63.9    
64.1    
64.2    
64.4    
64.5    
64.6    
64.8    
64.9    
65.0    
65.2    
65.3    
65.4    
65.6    
65.7    
65.9    
66.0    
66.1    
66.3    
66.4    
66.5    
66.7    
66.8    
66.9    
67.1    
67.2    
67.3    
67.5    
67.6    
67.8    
67.9    
68.0    
68.2    
68.3    
68.4    
68.6    
68.7    
68.8    
69.0    
69.1    
69.3    
69.4    
69.5    
69.7    
69.8    
69.9    
70.1    
70.2    
70.3    
70.5    
70.6    
70.7    
70.9    
71.0    
71.2    
71.3    
71.4    
71.6    
71.7    
71.8    
72.0    
72.1    
72.2    
72.4    
72.5    
72.7    
72.8    
72.9    
73.1    
73.2    
73.3    
73.5    
73.6    
73.7    
73.9    
74.0    
74.1    
74.3    
74.4    
74.6    
74.7    
74.8    
75.0    
75.1    
75.2    
75.4    
75.5    
75.6    
75.8    
75.9    
76.1    
76.2    
76.3    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.3    
77.4    
77.6    
77.7    
77.8    
78.0    
78.1    
78.2    
78.4    
78.5    
78.6    
78.8    
78.9    
79.0    
79.2    
79.3    
79.5    
79.6    
79.7    
79.9    
80.0    
80.1    
80.3    
80.4    
80.5    
80.7    
80.8    
81.0    
81.1    
81.2    
81.4    
81.5    
81.6    
81.8    
81.9    
82.0    
82.2    
82.3    
82.4    
82.6    
82.7    
82.9    
83.0    
83.1    
83.3    
83.4    
83.5    
83.7    
83.8    
83.9    
84.1    
84.2    
84.4    
84.5    
84.6    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.6    
85.7    
85.9    
86.0    
86.1    
86.3    
86.4    
86.5    
86.7    
86.8    
86.9    
87.1    
87.2    
87.3    
87.5    
87.6    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
89.0    
89.1    
89.3    
89.4    
89.5    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.9    
91.0    
91.2    
91.3    
91.4    
91.6    
91.7    
91.8    
92.0    
92.1    
92.2    
92.4    
92.5    
92.7    
92.8    
92.9    
93.1    
93.2    
93.3    
93.5    
93.6    
93.7    
93.9    
94.0    
94.1    
94.3    
94.4    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.8    
95.9    
96.1    
96.2    
96.3    
96.5    
96.6    
96.7    
96.9    
97.0    
97.1    
97.3    
97.4    
97.6    
97.7    
97.8    
98.0    
98.1    
98.2    
98.4    
98.5    
98.6    
98.8    
98.9    
99.0    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 38 predictions from path traversal
Error with prediction: snap lend_intergenic: 9838, rend_intergenic: 9259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87617, rend_intergenic: 83441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101932, rend_intergenic: 98388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122731, rend_intergenic: 121105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145177, rend_intergenic: 143530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168630, rend_intergenic: 147374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187705, rend_intergenic: 176710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190846, rend_intergenic: 188131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202981, rend_intergenic: 195269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 28 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 200418 - 212302
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support