-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_13/scaffold_13_4772833-4920634

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_13-snap.911-T1
Valid prediction for GeneMark_model.55243_t
Valid prediction for snap_scaffold_13-snap.920-T1
Valid prediction for GeneMark_model.55246_t
Valid prediction for GeneMark_model.55267_t
Valid prediction for snap_scaffold_13-snap.919-T1
Valid prediction for GlimmerHMM_glimmerT_32298-T1
Valid prediction for snap_scaffold_13-snap.903-T1
Valid prediction for GlimmerHMM_glimmerT_32292-T1
Valid prediction for Augustus_model.g21632.t1
Valid prediction for GlimmerHMM_glimmerT_32299-T1
Valid prediction for snap_scaffold_13-snap.906-T1
Valid prediction for GlimmerHMM_glimmerT_32297-T1
Valid prediction for Augustus_model.g21624.t1
Valid prediction for GlimmerHMM_glimmerT_32311-T1
Valid prediction for GeneMark_model.55237_t
Valid prediction for GlimmerHMM_glimmerT_32300-T1
Valid prediction for snap_scaffold_13-snap.907-T1
Valid prediction for snap_scaffold_13-snap.899-T1
Valid prediction for snap_scaffold_13-snap.895-T1
Valid prediction for GeneMark_model.55260_t
Valid prediction for GeneMark_model.55244_t
Valid prediction for GlimmerHMM_glimmerT_32291-T1
Valid prediction for GeneMark_model.55258_t
Valid prediction for snap_scaffold_13-snap.897-T1
Valid prediction for GlimmerHMM_glimmerT_32308-T1
Valid prediction for GeneMark_model.55254_t
Valid prediction for GlimmerHMM_glimmerT_32302-T1
Valid prediction for snap_scaffold_13-snap.893-T1
Valid prediction for GeneMark_model.55269_t
Valid prediction for Augustus_model.g21630.t1
Valid prediction for snap_scaffold_13-snap.913-T1
Valid prediction for GeneMark_model.55273_t
Valid prediction for snap_scaffold_13-snap.922-T1
Valid prediction for GeneMark_model.55275_t
Valid prediction for snap_scaffold_13-snap.894-T1
Valid prediction for GeneMark_model.55271_t
Valid prediction for snap_scaffold_13-snap.915-T1
Valid prediction for GeneMark_model.55251_t
Valid prediction for GeneMark_model.55253_t
Valid prediction for snap_scaffold_13-snap.891-T1
Valid prediction for GeneMark_model.55256_t
Valid prediction for Augustus_model.g21628.t1
Valid prediction for snap_scaffold_13-snap.896-T1
Valid prediction for GeneMark_model.55248_t
Valid prediction for GeneMark_model.55264_t
Valid prediction for snap_scaffold_13-snap.909-T1
Valid prediction for GlimmerHMM_glimmerT_32305-T1
Valid prediction for snap_scaffold_13-snap.912-T1
Valid prediction for GlimmerHMM_glimmerT_32312-T1
Valid prediction for snap_scaffold_13-snap.924-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_32295-T1
Valid prediction for GlimmerHMM_glimmerT_32296-T1
Valid prediction for Augustus_model.g21626.t1
Valid prediction for snap_scaffold_13-snap.898-T1
Valid prediction for snap_scaffold_13-snap.925-T1
Valid prediction for GlimmerHMM_glimmerT_32307-T1
Valid prediction for GeneMark_model.55247_t
Valid prediction for GeneMark_model.55270_t
Valid prediction for GeneMark_model.55252_t
Valid prediction for GlimmerHMM_glimmerT_32310-T1
Valid prediction for snap_scaffold_13-snap.892-T1
Valid prediction for GeneMark_model.55259_t
Valid prediction for GeneMark_model.55272_t
Valid prediction for Augustus_model.g21629.t1
Valid prediction for snap_scaffold_13-snap.914-T1
Valid prediction for GeneMark_model.55239_t
Valid prediction for snap_scaffold_13-snap.908-T1
Valid prediction for GlimmerHMM_glimmerT_32303-T1
Valid prediction for GeneMark_model.55240_t
Valid prediction for GeneMark_model.55250_t
Valid prediction for GlimmerHMM_glimmerT_32309-T1
Valid prediction for GeneMark_model.55262_t
Valid prediction for GlimmerHMM_glimmerT_32306-T1
Valid prediction for GeneMark_model.55265_t
Valid prediction for snap_scaffold_13-snap.910-T1
Valid prediction for snap_scaffold_13-snap.905-T1
Valid prediction for GeneMark_model.55236_t
Valid prediction for snap_scaffold_13-snap.902-T1
Valid prediction for GeneMark_model.55266_t
Valid prediction for GlimmerHMM_glimmerT_32304-T1
Valid prediction for snap_scaffold_13-snap.918-T1
Valid prediction for GeneMark_model.55277_t
Valid prediction for GeneMark_model.55274_t
Valid prediction for GlimmerHMM_glimmerT_32293-T1
Valid prediction for snap_scaffold_13-snap.901-T1
Valid prediction for GlimmerHMM_glimmerT_32313-T1
Valid prediction for snap_scaffold_13-snap.923-T1
Valid prediction for GlimmerHMM_glimmerT_32301-T1
Valid prediction for GeneMark_model.55255_t
Valid prediction for Augustus_model.g21631.t1
Valid prediction for GeneMark_model.55245_t
Valid prediction for Augustus_model.g21625.t1
Valid prediction for GeneMark_model.55263_t
Valid prediction for GeneMark_model.55261_t
Valid prediction for GeneMark_model.55241_t
Valid prediction for snap_scaffold_13-snap.900-T1
Valid prediction for snap_scaffold_13-snap.916-T1
Valid prediction for Augustus_model.g21627.t1
Valid prediction for GeneMark_model.55268_t
Valid prediction for GeneMark_model.55257_t
Valid prediction for snap_scaffold_13-snap.904-T1
Valid prediction for snap_scaffold_13-snap.921-T1
Valid prediction for Augustus_model.g21633.t1
Valid prediction for GlimmerHMM_glimmerT_32294-T1
Valid prediction for snap_scaffold_13-snap.917-T1
Valid prediction for GeneMark_model.55242_t
Valid prediction for GeneMark_model.55238_t
Valid prediction for GeneMark_model.55249_t
Valid prediction for GeneMark_model.55276_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 64388, rend_intergenic: 57206  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87725, rend_intergenic: 71340  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95299, rend_intergenic: 91594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108252, rend_intergenic: 95439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125774, rend_intergenic: 122279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132645, rend_intergenic: 130003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142911, rend_intergenic: 138591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 147802
-exon list size: 480


building trellis

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88.8    
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97.9    
98.1    
98.3    
98.5    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 64388, rend_intergenic: 57206  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87725, rend_intergenic: 71340  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95299, rend_intergenic: 91594  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108252, rend_intergenic: 95439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125774, rend_intergenic: 122279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132645, rend_intergenic: 130003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142911, rend_intergenic: 138591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12538
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11117
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support