-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_13/scaffold_13_3313758-3515065 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.54957_t Valid prediction for CodingQuarry_transcript_12907-T1 Valid prediction for Augustus_model.g21456.t1 Valid prediction for snap_scaffold_13-snap.630-T1 Valid prediction for snap_scaffold_13-snap.643-T1 Valid prediction for CodingQuarry_transcript_12900-T1 Valid prediction for snap_scaffold_13-snap.628-T1 Valid prediction for Augustus_model.g21449.t1 Valid prediction for HiQ_model.g21442.t1 Valid prediction for HiQ_model.g21436.t1 Valid prediction for HiQ_model.g21459.t1 Valid prediction for snap_scaffold_13-snap.623-T1 Valid prediction for GeneMark_model.54966_t Valid prediction for snap_scaffold_13-snap.625-T1 Valid prediction for pasa_asmbl_10666.p1 Valid prediction for HiQ_model.g21441.t1 Valid prediction for GeneMark_model.54980_t Valid prediction for GlimmerHMM_glimmerT_32061-T1 Valid prediction for snap_scaffold_13-snap.620-T1 Valid prediction for snap_scaffold_13-snap.639-T1 Valid prediction for GlimmerHMM_glimmerT_32077-T1 Valid prediction for GlimmerHMM_glimmerT_32059-T1 Valid prediction for GeneMark_model.54970_t Valid prediction for CodingQuarry_transcript_12901-T1 Valid prediction for snap_scaffold_13-snap.613-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for pasa_asmbl_10664.p1 Valid prediction for pasa_asmbl_10676.p1 Valid prediction for GeneMark_model.54952_t Valid prediction for snap_scaffold_13-snap.646-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_32073-T1 Valid prediction for GeneMark_model.54955_t Couldn't classify 193920, 194506 Sorry, prediction pasa_asmbl_10680.p1 fails validation. (ATG) AC 193199-193201 GT TGG (GGT) AG 193654-193819 GT GGG (GTA) AG 193920-194506 GG ACG -recovered pasa_asmbl_10680.p1, initial, 193199, 193201 -recovered pasa_asmbl_10680.p1, internal, 193654, 193819 Valid prediction for snap_scaffold_13-snap.619-T1 Valid prediction for snap_scaffold_13-snap.637-T1 Valid prediction for GlimmerHMM_glimmerT_32063-T1 Valid prediction for snap_scaffold_13-snap.611-T1 Valid prediction for Augustus_model.g21439.t1 Valid prediction for GeneMark_model.54962_t Couldn't classify 115169, 115267 Sorry, prediction pasa_asmbl_10671.p2 fails validation. (ATG) AC 113443-113479 GT GGG (ATG) AG 113703-113868 GT AGG (ATT) AG 114020-114101 GT AAG (AGT) AG 114265-114447 GT AGG (GTG) AG 114623-114675 GT AGG (GTG) AG 114789-114853 GT AGG (GTG) AG 114955-115058 GT AAG (GGT) AG 115169-115267 GG GAG -recovered pasa_asmbl_10671.p2, initial, 113443, 113479 add_exon() Sorry, pasa_asmbl_10671.p2 113703-113868-initial-1 is invalid. -recovered pasa_asmbl_10671.p2, initial, 113703, 113868 -recovered pasa_asmbl_10671.p2, internal, 113703, 113868 -recovered pasa_asmbl_10671.p2, internal, 114020, 114101 -recovered pasa_asmbl_10671.p2, internal, 114265, 114447 -recovered pasa_asmbl_10671.p2, internal, 114623, 114675 -recovered pasa_asmbl_10671.p2, internal, 114789, 114853 -recovered pasa_asmbl_10671.p2, internal, 114955, 115058 Valid prediction for GeneMark_model.54968_t Valid prediction for HiQ_model.g21438.t1 Valid prediction for GlimmerHMM_glimmerT_32082-T1 Valid prediction for GeneMark_model.54948_t Valid prediction for GlimmerHMM_glimmerT_32085-T1 Valid prediction for GlimmerHMM_glimmerT_32078-T1 Valid prediction for snap_scaffold_13-snap.632-T1 Valid prediction for GeneMark_model.54954_t Couldn't classify 12571, 12625 Sorry, prediction pasa_asmbl_10663.p1 fails validation. (CAG) TA 12571-12625 GT TGG (GAG) AG 12790-12957 GT AGG (GTG) AG 13065-13202 GT GGG (GTG) AG 13418-13540 GT GGG (GAT) AG 13692-13912 GT AGG (GAG) AG 14124-14348 GA GAG -recovered pasa_asmbl_10663.p1, terminal, 14124, 14348 -recovered pasa_asmbl_10663.p1, internal, 12790, 12957 -recovered pasa_asmbl_10663.p1, internal, 13065, 13202 -recovered pasa_asmbl_10663.p1, internal, 13418, 13540 -recovered pasa_asmbl_10663.p1, internal, 13692, 13912 Couldn't classify 115626, 115811 Sorry, prediction pasa_asmbl_10673.p1 fails validation. (GAG) TG 115626-115811 GT AGG (ATC) AG 115935-116064 GT TAG (CTC) AG 116199-116273 GT CGG (AGG) AG 116377-116458 GT GAG (CTC) AG 116554-116625 GT AGG (CGC) AG 116724-116820 TG GAT add_exon() Sorry, pasa_asmbl_10673.p1 116554-116625-terminal-1 is invalid. -recovered pasa_asmbl_10673.p1, terminal, 116554, 116625 -recovered pasa_asmbl_10673.p1, terminal, 116724, 116820 -recovered pasa_asmbl_10673.p1, internal, 115935, 116064 -recovered pasa_asmbl_10673.p1, internal, 116199, 116273 -recovered pasa_asmbl_10673.p1, internal, 116377, 116458 -recovered pasa_asmbl_10673.p1, internal, 116554, 116625 Valid prediction for snap_scaffold_13-snap.616-T1 Valid prediction for GeneMark_model.54963_t Valid prediction for GeneMark_model.54976_t Valid prediction for Augustus_model.g21434.t1 Valid prediction for GeneMark_model.54972_t Valid prediction for HiQ_model.g21454.t1 Valid prediction for snap_scaffold_13-snap.614-T1 Couldn't classify 48502, 48585 Sorry, prediction pasa_asmbl_11594.p1 fails validation. (AAA) AG 48502-48585 GT AGG (CTG) AG 48906-48962 GT TGG (GAC) AG 49296-49377 GT CGG (ACA) AG 49452-49483 GT ACG (GCT) AG 49725-49802 GT AGG (GCT) AG 49933-49998 GT AAG (GAC) AG 50130-50207 TG GAT -recovered pasa_asmbl_11594.p1, terminal, 50130, 50207 -recovered pasa_asmbl_11594.p1, internal, 48502, 48585 -recovered pasa_asmbl_11594.p1, internal, 48906, 48962 -recovered pasa_asmbl_11594.p1, internal, 49296, 49377 -recovered pasa_asmbl_11594.p1, internal, 49452, 49483 -recovered pasa_asmbl_11594.p1, internal, 49725, 49802 -recovered pasa_asmbl_11594.p1, internal, 49933, 49998 Valid prediction for CodingQuarry_transcript_12905-T1 Valid prediction for HiQ_model.g21452.t1 Couldn't classify 42514, 42639 Sorry, prediction pasa_asmbl_10668.p1 fails validation. (CTT) GA 42514-42639 GT AGG (TCG) AG 44756-44915 GT AGG (ATG) AG 45516-45612 GT AGG (GAA) AG 45956-46098 GT AGG (TGC) AG 46226-46323 GT CAG (ACC) AG 46450-46498 GT TGG (TGG) AG 46771-46907 CC GAC add_exon() Sorry, pasa_asmbl_10668.p1 45516-45612-initial-1 is invalid. -recovered pasa_asmbl_10668.p1, initial, 45516, 45612 -recovered pasa_asmbl_10668.p1, terminal, 46771, 46907 -recovered pasa_asmbl_10668.p1, internal, 44756, 44915 -recovered pasa_asmbl_10668.p1, internal, 45516, 45612 -recovered pasa_asmbl_10668.p1, internal, 45956, 46098 -recovered pasa_asmbl_10668.p1, internal, 46226, 46323 -recovered pasa_asmbl_10668.p1, internal, 46450, 46498 Valid prediction for GeneMark_model.54974_t Valid prediction for GlimmerHMM_glimmerT_32091-T1 Valid prediction for pasa_asmbl_10677.p1 Valid prediction for CodingQuarry_transcript_12904-T1 Valid prediction for snap_scaffold_13-snap.624-T1 Valid prediction for GlimmerHMM_glimmerT_32072-T1 Valid prediction for GlimmerHMM_glimmerT_32083-T1 Valid prediction for GlimmerHMM_glimmerT_32069-T1 Couldn't classify 51034, 51207 Sorry, prediction pasa_asmbl_10669.p1 fails validation. (ACG) CC 51034-51207 GT AGG (TTT) AG 51747-51801 GT AGG (GTC) AG 51908-51979 GT TGG (GTG) AG 52070-52201 GT AGG (GAC) AG 52640-52704 GT AGG (TAC) AG 52826-52952 GT CGG (GCA) AG 53042-53105 GT CCG (GTA) AG 53214-53300 GT TGG (CCC) AG 53420-53570 GT TGG (GTA) AG 53686-53833 GT GGG (GGA) AG 53948-54055 GT AGG (GTC) AG 55895-56048 GT AGG (CTC) AG 56905-57001 GT AGG (GAG) AG 57389-57518 GT AGG (ACA) AG 57953-58032 GT CGG (GCT) AG 59380-59475 AA GAA -recovered pasa_asmbl_10669.p1, terminal, 59380, 59475 -recovered pasa_asmbl_10669.p1, internal, 51747, 51801 -recovered pasa_asmbl_10669.p1, internal, 51908, 51979 -recovered pasa_asmbl_10669.p1, internal, 52070, 52201 -recovered pasa_asmbl_10669.p1, internal, 52640, 52704 -recovered pasa_asmbl_10669.p1, internal, 52826, 52952 -recovered pasa_asmbl_10669.p1, internal, 53042, 53105 -recovered pasa_asmbl_10669.p1, internal, 53214, 53300 -recovered pasa_asmbl_10669.p1, internal, 53420, 53570 -recovered pasa_asmbl_10669.p1, internal, 53686, 53833 -recovered pasa_asmbl_10669.p1, internal, 53948, 54055 -recovered pasa_asmbl_10669.p1, internal, 55895, 56048 -recovered pasa_asmbl_10669.p1, internal, 56905, 57001 -recovered pasa_asmbl_10669.p1, internal, 57389, 57518 -recovered pasa_asmbl_10669.p1, internal, 57953, 58032 Valid prediction for GeneMark_model.54950_t Valid prediction for GlimmerHMM_glimmerT_32087-T1 Valid prediction for GlimmerHMM_glimmerT_32065-T1 Couldn't classify 36785, 36834 Couldn't classify 37330, 37568 Sorry, prediction pasa_asmbl_10667.p1 fails validation. (CAA) AC 36785-36834 GT AGG (CAA) AG 36954-37102 GT CGG (TCA) AG 37330-37568 GC AGG -recovered pasa_asmbl_10667.p1, internal, 36954, 37102 -recovered pasa_asmbl_10667.p1, internal, 37330, 37568 Valid prediction for GlimmerHMM_glimmerT_32067-T1 Valid prediction for GlimmerHMM_glimmerT_32068-T1 Valid prediction for snap_scaffold_13-snap.622-T1 Valid prediction for CodingQuarry_transcript_12908-T1 Valid prediction for Augustus_model.g21445.t1 Couldn't classify 194570, 194719 Sorry, prediction pasa_asmbl_10681.p1 fails validation. (CTC) CC 194570-194719 GT AGG (GTG) AG 194829-194969 GT AGG (CTT) AG 195160-195336 GT AGG (GTA) AG 195498-195562 GT AGG (GTA) AG 195654-195753 GT AGG (TTA) AG 195882-195932 GT AGG (CAG) AG 196078-196239 GT AGG (TCC) AG 196353-196400 GT TGG (AAC) AG 196636-196836 GT TGG (CAC) AG 196911-196963 GT AGG (GTC) AG 197175-197272 GT CGG (CTG) AG 197663-197832 AA AGA -recovered pasa_asmbl_10681.p1, terminal, 197663, 197832 -recovered pasa_asmbl_10681.p1, internal, 194829, 194969 -recovered pasa_asmbl_10681.p1, internal, 195160, 195336 -recovered pasa_asmbl_10681.p1, internal, 195498, 195562 -recovered pasa_asmbl_10681.p1, internal, 195654, 195753 -recovered pasa_asmbl_10681.p1, internal, 195882, 195932 -recovered pasa_asmbl_10681.p1, internal, 196078, 196239 -recovered pasa_asmbl_10681.p1, internal, 196353, 196400 -recovered pasa_asmbl_10681.p1, internal, 196636, 196836 -recovered pasa_asmbl_10681.p1, internal, 196911, 196963 -recovered pasa_asmbl_10681.p1, internal, 197175, 197272 Valid prediction for CodingQuarry_transcript_12906-T1 Valid prediction for snap_scaffold_13-snap.617-T1 Valid prediction for GlimmerHMM_glimmerT_32092-T1 Valid prediction for Augustus_model.g21446.t1 Valid prediction for snap_scaffold_13-snap.640-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_13-snap.645-T1 Valid prediction for HiQ_model.g21435.t1 Valid prediction for CodingQuarry_transcript_12899-T1 Valid prediction for pasa_asmbl_9506.p1 Valid prediction for Augustus_model.g21437.t1 Valid prediction for CodingQuarry_transcript_12902-T1 Valid prediction for snap_scaffold_13-snap.612-T1 Valid prediction for GeneMark_model.54947_t Valid prediction for GeneMark_model.54977_t Valid prediction for snap_scaffold_13-snap.636-T1 Valid prediction for CodingQuarry_transcript_12903-T1 Valid prediction for GeneMark_model.54978_t Valid prediction for Augustus_model.g21447.t1 Valid prediction for GlimmerHMM_glimmerT_32071-T1 Valid prediction for snap_scaffold_13-snap.627-T1 Valid prediction for snap_scaffold_13-snap.633-T1 Valid prediction for Augustus_model.g21458.t1 Valid prediction for Augustus_model.g21448.t1 Valid prediction for GlimmerHMM_glimmerT_32064-T1 Valid prediction for GeneMark_model.54979_t Valid prediction for GlimmerHMM_glimmerT_32060-T1 Valid prediction for snap_scaffold_13-snap.621-T1 Valid prediction for HiQ_model.g21457.t1 Valid prediction for GeneMark_model.54969_t Valid prediction for CodingQuarry_transcript_12897-T1 Valid prediction for GeneMark_model.54965_t Valid prediction for GeneMark_model.54960_t Valid prediction for GeneMark_model.54973_t Valid prediction for GeneMark_model.54949_t Valid prediction for Augustus_model.g21433.t1 Valid prediction for GeneMark_model.54953_t Valid prediction for snap_scaffold_13-snap.638-T1 Valid prediction for GlimmerHMM_glimmerT_32088-T1 Couldn't classify 66441, 66454 Couldn't classify 70331, 71429 Sorry, prediction pasa_asmbl_9499.p1 fails validation. (TGT) AC 66441-66454 GT AGG (CGT) AG 66581-66716 GT AGG (GGC) AG 66863-66980 GT GGG (TCC) AG 67105-67229 GT AGG (AGC) AG 67334-67401 GT TGG (GTT) AG 67500-67607 GT AGG (GTA) AG 67739-67844 GT AGG (ATG) AG 68236-68256 GT AGG (GTG) AG 68679-68734 GT AGG (GGT) AG 69525-69607 GT AGG (ATT) AG 69715-69780 GT GGG (ATG) AG 69890-69952 GT CGG (GTA) AG 70103-70184 GT GTG (GCC) AG 70331-71429 NN AGN -recovered pasa_asmbl_9499.p1, initial, 68236, 68256 add_exon() Sorry, pasa_asmbl_9499.p1 69890-69952-initial-1 is invalid. -recovered pasa_asmbl_9499.p1, initial, 69890, 69952 add_exon() Sorry, pasa_asmbl_9499.p1 69525-69607-terminal-2 is invalid. -recovered pasa_asmbl_9499.p1, terminal, 69525, 69607 -recovered pasa_asmbl_9499.p1, internal, 66581, 66716 -recovered pasa_asmbl_9499.p1, internal, 66863, 66980 -recovered pasa_asmbl_9499.p1, internal, 67105, 67229 -recovered pasa_asmbl_9499.p1, internal, 67334, 67401 -recovered pasa_asmbl_9499.p1, internal, 67500, 67607 -recovered pasa_asmbl_9499.p1, internal, 67739, 67844 -recovered pasa_asmbl_9499.p1, internal, 68236, 68256 -recovered pasa_asmbl_9499.p1, internal, 68679, 68734 -recovered pasa_asmbl_9499.p1, internal, 69525, 69607 -recovered pasa_asmbl_9499.p1, internal, 69715, 69780 -recovered pasa_asmbl_9499.p1, internal, 69890, 69952 -recovered pasa_asmbl_9499.p1, internal, 70103, 70184 Valid prediction for GlimmerHMM_glimmerT_32081-T1 Valid prediction for GeneMark_model.54958_t Valid prediction for GeneMark_model.54951_t Couldn't classify 32028, 32123 Couldn't classify 32679, 32739 Sorry, prediction CodingQuarry_transcript_12909-T1 fails validation. (ATG) TC 27707-27904 GT AAG (AGA) AG 28514-28625 GT TGG (GTG) AG 28830-28981 GT AGG (AAT) AG 29149-29237 GT AGG (GTC) AG 29426-29541 GT AGG (GCA) AG 29659-29787 GT AGG (GGG) AG 30346-30449 GT CGG (ATC) AG 30864-30971 GT TGG (ATT) AG 31058-31119 GT AGG (GGG) AG 31368-31518 GT CGG (GTG) AG 31626-31700 GT CTG (CTT) AG 31824-31944 GT AGG (GTT) AG 32028-32123 TA AGT (AGG) GG 32679-32739 GT AGG (CTT) AG 32884-32962 TC GAT -recovered CodingQuarry_transcript_12909-T1, initial, 27707, 27904 add_exon() Sorry, CodingQuarry_transcript_12909-T1 29149-29237-terminal-2 is invalid. -recovered CodingQuarry_transcript_12909-T1, terminal, 29149, 29237 add_exon() Sorry, CodingQuarry_transcript_12909-T1 29426-29541-terminal-2 is invalid. -recovered CodingQuarry_transcript_12909-T1, terminal, 29426, 29541 add_exon() Sorry, CodingQuarry_transcript_12909-T1 29659-29787-terminal-1 is invalid. -recovered CodingQuarry_transcript_12909-T1, terminal, 29659, 29787 -recovered CodingQuarry_transcript_12909-T1, terminal, 32884, 32962 -recovered CodingQuarry_transcript_12909-T1, internal, 28514, 28625 -recovered CodingQuarry_transcript_12909-T1, internal, 28830, 28981 -recovered CodingQuarry_transcript_12909-T1, internal, 29149, 29237 -recovered CodingQuarry_transcript_12909-T1, internal, 29426, 29541 -recovered CodingQuarry_transcript_12909-T1, internal, 29659, 29787 -recovered CodingQuarry_transcript_12909-T1, internal, 30346, 30449 -recovered CodingQuarry_transcript_12909-T1, internal, 30864, 30971 -recovered CodingQuarry_transcript_12909-T1, internal, 31058, 31119 -recovered CodingQuarry_transcript_12909-T1, internal, 31368, 31518 -recovered CodingQuarry_transcript_12909-T1, internal, 31626, 31700 -recovered CodingQuarry_transcript_12909-T1, internal, 31824, 31944 Valid prediction for pasa_asmbl_9495.p1 Valid prediction for Augustus_model.g21444.t1 Valid prediction for GeneMark_model.54956_t Valid prediction for GlimmerHMM_glimmerT_32079-T1 Valid prediction for snap_scaffold_13-snap.618-T1 Valid prediction for Augustus_model.g21450.t1 Valid prediction for GlimmerHMM_glimmerT_32084-T1 Valid prediction for snap_scaffold_13-snap.615-T1 Valid prediction for pasa_asmbl_9489.p1 Valid prediction for GlimmerHMM_glimmerT_32076-T1 Valid prediction for GlimmerHMM_glimmerT_32062-T1 Valid prediction for snap_scaffold_13-snap.629-T1 Valid prediction for CodingQuarry_transcript_12898-T1 Valid prediction for Augustus_model.g21453.t1 Valid prediction for Augustus_model.g21432.t1 Valid prediction for Augustus_model.g21451.t1 Valid prediction for snap_scaffold_13-snap.641-T1 Valid prediction for GeneMark_model.54959_t Valid prediction for Augustus_model.g21443.t1 Valid prediction for GeneMark_model.54975_t Couldn't classify 65992, 66051 Sorry, prediction pasa_asmbl_10369.p1 fails validation. (ATG) GG 63374-63432 GT TGG (GCC) AG 65457-65565 GT AGG (GTT) AG 65718-65843 GT AGG (GCC) AG 65992-66051 CT TCC -recovered pasa_asmbl_10369.p1, initial, 63374, 63432 -recovered pasa_asmbl_10369.p1, internal, 65457, 65565 -recovered pasa_asmbl_10369.p1, internal, 65718, 65843 Valid prediction for snap_scaffold_13-snap.634-T1 Valid prediction for Augustus_model.g21455.t1 Valid prediction for GlimmerHMM_glimmerT_32086-T1 Valid prediction for GeneMark_model.54967_t Valid prediction for snap_scaffold_13-snap.642-T1 Valid prediction for snap_scaffold_13-snap.631-T1 Valid prediction for GlimmerHMM_glimmerT_32066-T1 Valid prediction for GlimmerHMM_glimmerT_32070-T1 Valid prediction for snap_scaffold_13-snap.644-T1 Valid prediction for GlimmerHMM_glimmerT_32089-T1 Valid prediction for snap_scaffold_13-snap.626-T1 Valid prediction for snap_scaffold_13-snap.609-T1 Valid prediction for GlimmerHMM_glimmerT_32075-T1 Couldn't classify 27372, 27433 Couldn't classify 28830, 28933 Sorry, prediction pasa_asmbl_9504.p1 fails validation. (CAA) AT 27372-27433 GT GGG (TGC) AG 27682-27904 GT AAG (AGA) AG 28514-28625 GT TGG (GTG) AG 28830-28933 GT GGG -recovered pasa_asmbl_9504.p1, internal, 27682, 27904 -recovered pasa_asmbl_9504.p1, internal, 28514, 28625 -recovered pasa_asmbl_9504.p1, internal, 28830, 28933 Valid prediction for snap_scaffold_13-snap.610-T1 Couldn't classify 20333, 20397 Sorry, prediction pasa_asmbl_9505.p1 fails validation. (CAT) CC 20333-20397 GT CAG (TTA) AG 20652-20743 GT CGG (TCC) AG 20874-20939 GT AGG (AGG) AG 21091-21185 GT ATG (CAT) AG 21315-21527 GT AGG (GTT) AG 21624-21775 GT TGG (CCC) AG 22152-22308 GT AGG (GTT) AG 22428-22580 GA GAG -recovered pasa_asmbl_9505.p1, terminal, 22428, 22580 -recovered pasa_asmbl_9505.p1, internal, 20652, 20743 -recovered pasa_asmbl_9505.p1, internal, 20874, 20939 -recovered pasa_asmbl_9505.p1, internal, 21091, 21185 -recovered pasa_asmbl_9505.p1, internal, 21315, 21527 -recovered pasa_asmbl_9505.p1, internal, 21624, 21775 -recovered pasa_asmbl_9505.p1, internal, 22152, 22308 Valid prediction for snap_scaffold_13-snap.635-T1 Valid prediction for GeneMark_model.54971_t Valid prediction for GlimmerHMM_glimmerT_32090-T1 Valid prediction for GeneMark_model.54946_t Valid prediction for pasa_asmbl_9492.p1 Valid prediction for GlimmerHMM_glimmerT_32074-T1 Valid prediction for HiQ_model.g21440.t1 Valid prediction for GlimmerHMM_glimmerT_32080-T1 Valid prediction for GeneMark_model.54961_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 104213, rend_intergenic: 99043 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109630, rend_intergenic: 108603 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 201308 -exon list size: 610 building trellis 0.2 0.3 0.5 0.7 0.8 1.0 1.1 1.3 1.5 1.6 1.8 2.0 2.1 2.3 2.5 2.6 2.8 2.9 3.1 3.3 3.4 3.6 3.8 3.9 4.1 4.2 4.4 4.6 4.7 4.9 5.1 5.2 5.4 5.6 5.7 5.9 6.0 6.2 6.4 6.5 6.7 6.9 7.0 7.2 7.4 7.5 7.7 7.8 8.0 8.2 8.3 8.5 8.7 8.8 9.0 9.2 9.3 9.5 9.6 9.8 10.0 10.1 10.3 10.5 10.6 10.8 10.9 11.1 11.3 11.4 11.6 11.8 11.9 12.1 12.3 12.4 12.6 12.7 12.9 13.1 13.2 13.4 13.6 13.7 13.9 14.1 14.2 14.4 14.5 14.7 14.9 15.0 15.2 15.4 15.5 15.7 15.8 16.0 16.2 16.3 16.5 16.7 16.8 17.0 17.2 17.3 17.5 17.6 17.8 18.0 18.1 18.3 18.5 18.6 18.8 19.0 19.1 19.3 19.4 19.6 19.8 19.9 20.1 20.3 20.4 20.6 20.8 20.9 21.1 21.2 21.4 21.6 21.7 21.9 22.1 22.2 22.4 22.5 22.7 22.9 23.0 23.2 23.4 23.5 23.7 23.9 24.0 24.2 24.3 24.5 24.7 24.8 25.0 25.2 25.3 25.5 25.7 25.8 26.0 26.1 26.3 26.5 26.6 26.8 27.0 27.1 27.3 27.5 27.6 27.8 27.9 28.1 28.3 28.4 28.6 28.8 28.9 29.1 29.2 29.4 29.6 29.7 29.9 30.1 30.2 30.4 30.6 30.7 30.9 31.0 31.2 31.4 31.5 31.7 31.9 32.0 32.2 32.4 32.5 32.7 32.8 33.0 33.2 33.3 33.5 33.7 33.8 34.0 34.2 34.3 34.5 34.6 34.8 35.0 35.1 35.3 35.5 35.6 35.8 35.9 36.1 36.3 36.4 36.6 36.8 36.9 37.1 37.3 37.4 37.6 37.7 37.9 38.1 38.2 38.4 38.6 38.7 38.9 39.1 39.2 39.4 39.5 39.7 39.9 40.0 40.2 40.4 40.5 40.7 40.8 41.0 41.2 41.3 41.5 41.7 41.8 42.0 42.2 42.3 42.5 42.6 42.8 43.0 43.1 43.3 43.5 43.6 43.8 44.0 44.1 44.3 44.4 44.6 44.8 44.9 45.1 45.3 45.4 45.6 45.8 45.9 46.1 46.2 46.4 46.6 46.7 46.9 47.1 47.2 47.4 47.5 47.7 47.9 48.0 48.2 48.4 48.5 48.7 48.9 49.0 49.2 49.3 49.5 49.7 49.8 50.0 50.2 50.3 50.5 50.7 50.8 51.0 51.1 51.3 51.5 51.6 51.8 52.0 52.1 52.3 52.5 52.6 52.8 52.9 53.1 53.3 53.4 53.6 53.8 53.9 54.1 54.2 54.4 54.6 54.7 54.9 55.1 55.2 55.4 55.6 55.7 55.9 56.0 56.2 56.4 56.5 56.7 56.9 57.0 57.2 57.4 57.5 57.7 57.8 58.0 58.2 58.3 58.5 58.7 58.8 59.0 59.2 59.3 59.5 59.6 59.8 60.0 60.1 60.3 60.5 60.6 60.8 60.9 61.1 61.3 61.4 61.6 61.8 61.9 62.1 62.3 62.4 62.6 62.7 62.9 63.1 63.2 63.4 63.6 63.7 63.9 64.1 64.2 64.4 64.5 64.7 64.9 65.0 65.2 65.4 65.5 65.7 65.8 66.0 66.2 66.3 66.5 66.7 66.8 67.0 67.2 67.3 67.5 67.6 67.8 68.0 68.1 68.3 68.5 68.6 68.8 69.0 69.1 69.3 69.4 69.6 69.8 69.9 70.1 70.3 70.4 70.6 70.8 70.9 71.1 71.2 71.4 71.6 71.7 71.9 72.1 72.2 72.4 72.5 72.7 72.9 73.0 73.2 73.4 73.5 73.7 73.9 74.0 74.2 74.3 74.5 74.7 74.8 75.0 75.2 75.3 75.5 75.7 75.8 76.0 76.1 76.3 76.5 76.6 76.8 77.0 77.1 77.3 77.5 77.6 77.8 77.9 78.1 78.3 78.4 78.6 78.8 78.9 79.1 79.2 79.4 79.6 79.7 79.9 80.1 80.2 80.4 80.6 80.7 80.9 81.0 81.2 81.4 81.5 81.7 81.9 82.0 82.2 82.4 82.5 82.7 82.8 83.0 83.2 83.3 83.5 83.7 83.8 84.0 84.2 84.3 84.5 84.6 84.8 85.0 85.1 85.3 85.5 85.6 85.8 85.9 86.1 86.3 86.4 86.6 86.8 86.9 87.1 87.3 87.4 87.6 87.7 87.9 88.1 88.2 88.4 88.6 88.7 88.9 89.1 89.2 89.4 89.5 89.7 89.9 90.0 90.2 90.4 90.5 90.7 90.8 91.0 91.2 91.3 91.5 91.7 91.8 92.0 92.2 92.3 92.5 92.6 92.8 93.0 93.1 93.3 93.5 93.6 93.8 94.0 94.1 94.3 94.4 94.6 94.8 94.9 95.1 95.3 95.4 95.6 95.8 95.9 96.1 96.2 96.4 96.6 96.7 96.9 97.1 97.2 97.4 97.5 97.7 97.9 98.0 98.2 98.4 98.5 98.7 98.9 99.0 99.2 99.3 99.5 99.7 99.8 -found 34 predictions from path traversal Error with prediction: snap lend_intergenic: 104213, rend_intergenic: 99043 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109630, rend_intergenic: 108603 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 32 predictions persist after filtering for low support