-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_13/scaffold_13_2206993-2487960 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_31900-T1 Valid prediction for snap_scaffold_13-snap.430-T1 Valid prediction for Augustus_model.g21322.t1 Valid prediction for HiQ_model.g21331.t1 Valid prediction for GeneMark_model.54802_t Valid prediction for GlimmerHMM_glimmerT_31906-T1 Valid prediction for GeneMark_model.54784_t Valid prediction for snap_scaffold_13-snap.438-T1 Valid prediction for pasa_asmbl_10556.p1 Valid prediction for snap_scaffold_13-snap.443-T1 Valid prediction for GlimmerHMM_glimmerT_31888-T1 Valid prediction for GlimmerHMM_glimmerT_31897-T1 Valid prediction for GlimmerHMM_glimmerT_31891-T1 Valid prediction for Augustus_model.g21326.t1 Valid prediction for GeneMark_model.54792_t Valid prediction for GeneMark_model.54780_t Valid prediction for snap_scaffold_13-snap.434-T1 Valid prediction for snap_scaffold_13-snap.455-T1 Valid prediction for GlimmerHMM_glimmerT_31915-T1 Valid prediction for pasa_asmbl_10595.p1 Valid prediction for CodingQuarry_transcript_12851-T1 Valid prediction for GeneMark_model.54767_t Valid prediction for snap_scaffold_13-snap.468-T1 Valid prediction for snap_scaffold_13-snap.428-T1 Valid prediction for snap_scaffold_13-snap.467-T1 Valid prediction for CodingQuarry_transcript_12850-T1 Valid prediction for snap_scaffold_13-snap.425-T1 Valid prediction for GeneMark_model.54798_t Valid prediction for CodingQuarry_transcript_12857-T1 Valid prediction for GlimmerHMM_glimmerT_31895-T1 Valid prediction for GlimmerHMM_glimmerT_31910-T1 Valid prediction for GeneMark_model.54791_t Valid prediction for CodingQuarry_transcript_12860-T1 Valid prediction for snap_scaffold_13-snap.437-T1 Valid prediction for GeneMark_model.54806_t Valid prediction for GeneMark_model.54809_t Valid prediction for snap_scaffold_13-snap.449-T1 Valid prediction for snap_scaffold_13-snap.469-T1 Valid prediction for GeneMark_model.54807_t Valid prediction for GeneMark_model.54808_t Valid prediction for CodingQuarry_transcript_12852-T1 Valid prediction for GeneMark_model.54774_t Valid prediction for GlimmerHMM_glimmerT_31901-T1 Valid prediction for CodingQuarry_transcript_12847-T1 Valid prediction for pasa_asmbl_10592.p1 Valid prediction for GlimmerHMM_glimmerT_31912-T1 Valid prediction for GeneMark_model.54772_t Valid prediction for GeneMark_model.54811_t Valid prediction for snap_scaffold_13-snap.471-T1 Valid prediction for GeneMark_model.54789_t Valid prediction for pasa_asmbl_10563.p1 Valid prediction for HiQ_model.g21339.t1 Valid prediction for snap_scaffold_13-snap.459-T1 Valid prediction for CodingQuarry_transcript_12848-T1 Valid prediction for GeneMark_model.54804_t Valid prediction for CodingQuarry_transcript_12844-T1 Valid prediction for snap_scaffold_13-snap.466-T1 Valid prediction for GlimmerHMM_glimmerT_31894-T1 Valid prediction for snap_scaffold_13-snap.427-T1 Valid prediction for snap_scaffold_13-snap.451-T1 Valid prediction for GlimmerHMM_glimmerT_31908-T1 Valid prediction for snap_scaffold_13-snap.450-T1 Couldn't classify 128818, 128893 Sorry, prediction pasa_asmbl_10582.p1 fails validation. (GAG) TA 128818-128893 GT GGG (CGG) AG 131413-131679 GT AGG (AGA) AG 132187-132465 GT AGG (TTC) AG 132885-133142 GT AGG (GTG) AG 133374-133640 GT AGG (CTA) AG 134011-134283 GT AGG (ACC) AG 136868-137134 GT AGG (CCA) AG 138160-138435 GT AGG (GCT) AG 138670-138942 GT CGG (CTG) AG 139085-139375 GT GGG (AGG) AG 140235-140504 GT AGG (AGT) AG 140772-142061 GT TGG (CCG) AG 143001-143282 GT TGG (TCG) AG 143535-143616 GT AGG (GGA) AG 143732-143853 GT AGG (GCT) AG 144229-144426 GT AGG (ACC) AG 144588-144626 GT AGG (ACT) AG 144706-144804 GT AGG (GTT) AG 144946-145164 GT AGG (GGC) AG 145255-145288 GT CCG (AGT) AG 145395-145447 GT AGG (CAG) AG 145548-145649 GT AGG (CAG) AG 147615-147757 GT AGG (ATG) AG 147919-148119 GT AGG (CTG) AG 148210-148286 GT AGG (CCA) AG 148616-148786 GT GGG (GTC) AG 148903-149062 GT AGG (GAG) AG 149307-149423 GT AGG (GAG) AG 149562-149726 GT AGG (GGG) AG 149810-149968 GT AGG (CTG) AG 150513-150690 GT GAG (GTC) AG 150959-151072 GT GGG (ATG) AG 151243-151410 GT AGG (TGC) AG 151543-151645 GT AGG (GTG) AG 151934-152063 GT AGG (CTC) AG 152313-152406 GT AGG (TCA) AG 152816-152858 GT ATG (CGA) AG 153251-154373 AA AAA -recovered pasa_asmbl_10582.p1, initial, 147919, 148119 add_exon() Sorry, pasa_asmbl_10582.p1 151243-151410-initial-1 is invalid. -recovered pasa_asmbl_10582.p1, initial, 151243, 151410 add_exon() Sorry, pasa_asmbl_10582.p1 143535-143616-terminal-3 is invalid. -recovered pasa_asmbl_10582.p1, terminal, 143535, 143616 add_exon() Sorry, pasa_asmbl_10582.p1 144229-144426-terminal-1 is invalid. -recovered pasa_asmbl_10582.p1, terminal, 144229, 144426 -recovered pasa_asmbl_10582.p1, terminal, 153251, 154373 -recovered pasa_asmbl_10582.p1, internal, 131413, 131679 -recovered pasa_asmbl_10582.p1, internal, 132187, 132465 -recovered pasa_asmbl_10582.p1, internal, 132885, 133142 -recovered pasa_asmbl_10582.p1, internal, 133374, 133640 -recovered pasa_asmbl_10582.p1, internal, 134011, 134283 -recovered pasa_asmbl_10582.p1, internal, 136868, 137134 -recovered pasa_asmbl_10582.p1, internal, 138160, 138435 -recovered pasa_asmbl_10582.p1, internal, 138670, 138942 -recovered pasa_asmbl_10582.p1, internal, 139085, 139375 -recovered pasa_asmbl_10582.p1, internal, 140235, 140504 -recovered pasa_asmbl_10582.p1, internal, 140772, 142061 -recovered pasa_asmbl_10582.p1, internal, 143001, 143282 -recovered pasa_asmbl_10582.p1, internal, 143535, 143616 -recovered pasa_asmbl_10582.p1, internal, 143732, 143853 -recovered pasa_asmbl_10582.p1, internal, 144229, 144426 -recovered pasa_asmbl_10582.p1, internal, 144588, 144626 -recovered pasa_asmbl_10582.p1, internal, 144706, 144804 -recovered pasa_asmbl_10582.p1, internal, 144946, 145164 -recovered pasa_asmbl_10582.p1, internal, 145255, 145288 -recovered pasa_asmbl_10582.p1, internal, 145395, 145447 -recovered pasa_asmbl_10582.p1, internal, 145548, 145649 -recovered pasa_asmbl_10582.p1, internal, 147615, 147757 -recovered pasa_asmbl_10582.p1, internal, 147919, 148119 -recovered pasa_asmbl_10582.p1, internal, 148210, 148286 -recovered pasa_asmbl_10582.p1, internal, 148616, 148786 -recovered pasa_asmbl_10582.p1, internal, 148903, 149062 -recovered pasa_asmbl_10582.p1, internal, 149307, 149423 -recovered pasa_asmbl_10582.p1, internal, 149562, 149726 -recovered pasa_asmbl_10582.p1, internal, 149810, 149968 -recovered pasa_asmbl_10582.p1, internal, 150513, 150690 -recovered pasa_asmbl_10582.p1, internal, 150959, 151072 -recovered pasa_asmbl_10582.p1, internal, 151243, 151410 -recovered pasa_asmbl_10582.p1, internal, 151543, 151645 -recovered pasa_asmbl_10582.p1, internal, 151934, 152063 -recovered pasa_asmbl_10582.p1, internal, 152313, 152406 -recovered pasa_asmbl_10582.p1, internal, 152816, 152858 Valid prediction for snap_scaffold_13-snap.454-T1 Valid prediction for snap_scaffold_13-snap.448-T1 Valid prediction for snap_scaffold_13-snap.439-T1 Valid prediction for GlimmerHMM_glimmerT_31911-T1 Valid prediction for GlimmerHMM_glimmerT_31885-T1 Valid prediction for GeneMark_model.54771_t Valid prediction for Augustus_model.g21329.t1 Valid prediction for snap_scaffold_13-snap.452-T1 Valid prediction for snap_scaffold_13-snap.432-T1 Valid prediction for Augustus_model.g21336.t1 Valid prediction for CodingQuarry_transcript_12846-T1 Valid prediction for GeneMark_model.54769_t Valid prediction for GlimmerHMM_glimmerT_31904-T1 Valid prediction for Augustus_model.g21333.t1 Valid prediction for GeneMark_model.54786_t Valid prediction for snap_scaffold_13-snap.456-T1 Valid prediction for pasa_asmbl_10598.p1 Couldn't classify 214609, 214861 Couldn't classify 214979, 215148 Sorry, prediction pasa_asmbl_10596.p1 fails validation. (GGT) CA 214609-214861 GT AGG (GCT) AG 214979-215148 AG ACA Valid prediction for snap_scaffold_13-snap.444-T1 Valid prediction for snap_scaffold_13-snap.465-T1 Valid prediction for GeneMark_model.54773_t Valid prediction for CodingQuarry_transcript_12853-T1 Valid prediction for GeneMark_model.54782_t Couldn't classify 127125, 127493 Couldn't classify 127557, 127736 Sorry, prediction CodingQuarry_transcript_12849-T1 fails validation. (ATG) TT 122090-122099 GT AGG (CCT) AG 123598-123864 GT TGG (CAT) AG 123972-124238 GT GGG (CTT) AG 124766-124840 GT AGG (CTG) AG 125177-125251 GT AGG (TGG) AG 125700-125768 GT AGG (CCC) AG 126222-126296 GT AGG (CCC) AG 126411-126476 GT AGG (TAC) AG 127125-127493 CT ATC (CTG) AC 127557-127736 GT AGG (AGA) AG 127871-127939 GT AGG (AGG) AG 128819-128893 GT GGG (CGG) AG 131413-131679 GT AGG (AGA) AG 132187-132465 GT AGG (TTC) AG 132885-133142 GT AGG (GTG) AG 133374-133640 GT AGG (CTA) AG 134011-134283 GT AGG (ACC) AG 136868-137134 GT AGG (CCA) AG 138160-138435 GT AGG (GCT) AG 138670-138942 GT CGG (CTG) AG 139085-139375 GT GGG (AGG) AG 140235-140504 GT AGG (AGT) AG 140772-142061 GT TGG (CCG) AG 143001-143282 GT TGG (TCG) AG 143535-143616 GT AGG (GGA) AG 143732-143853 GT AGG (GCT) AG 144229-144426 GT AGG (ACC) AG 144588-144626 GT AGG (ACT) AG 144706-144804 GT AGG (GTT) AG 144946-145164 GT AGG (GGC) AG 145255-145288 GT CCG (AGT) AG 145395-145447 GT AGG (CAG) AG 145548-145649 GT AGG (CAG) AG 147615-147757 GT AGG (ATG) AG 147919-148119 GT AGG (CTG) AG 148210-148286 GT AGG (CCA) AG 148616-148786 GT GGG (GTC) AG 148903-149062 GT AGG (GAG) AG 149307-149423 GT AGG (GAG) AG 149562-149726 GT AGG (GGG) AG 149810-149968 GT AGG (CTG) AG 150513-150690 GT GAG (GTC) AG 150959-151072 GT GGG (ATG) AG 151243-151410 GT AGG (TGC) AG 151543-151645 GT AGG (GTG) AG 151934-152063 GT AGG (CTC) AG 152313-152406 GT AGG (TCA) AG 152816-152858 GT ATG (CGA) AG 153251-154373 AA AAA -recovered CodingQuarry_transcript_12849-T1, initial, 122090, 122099 -recovered CodingQuarry_transcript_12849-T1, initial, 147919, 148119 add_exon() Sorry, CodingQuarry_transcript_12849-T1 151243-151410-initial-1 is invalid. -recovered CodingQuarry_transcript_12849-T1, initial, 151243, 151410 add_exon() Sorry, CodingQuarry_transcript_12849-T1 143535-143616-terminal-3 is invalid. -recovered CodingQuarry_transcript_12849-T1, terminal, 143535, 143616 add_exon() Sorry, CodingQuarry_transcript_12849-T1 144229-144426-terminal-1 is invalid. -recovered CodingQuarry_transcript_12849-T1, terminal, 144229, 144426 -recovered CodingQuarry_transcript_12849-T1, terminal, 153251, 154373 -recovered CodingQuarry_transcript_12849-T1, internal, 123598, 123864 -recovered CodingQuarry_transcript_12849-T1, internal, 123972, 124238 -recovered CodingQuarry_transcript_12849-T1, internal, 124766, 124840 -recovered CodingQuarry_transcript_12849-T1, internal, 125177, 125251 -recovered CodingQuarry_transcript_12849-T1, internal, 125700, 125768 -recovered CodingQuarry_transcript_12849-T1, internal, 126222, 126296 -recovered CodingQuarry_transcript_12849-T1, internal, 126411, 126476 -recovered CodingQuarry_transcript_12849-T1, internal, 127871, 127939 -recovered CodingQuarry_transcript_12849-T1, internal, 128819, 128893 -recovered CodingQuarry_transcript_12849-T1, internal, 131413, 131679 -recovered CodingQuarry_transcript_12849-T1, internal, 132187, 132465 -recovered CodingQuarry_transcript_12849-T1, internal, 132885, 133142 -recovered CodingQuarry_transcript_12849-T1, internal, 133374, 133640 -recovered CodingQuarry_transcript_12849-T1, internal, 134011, 134283 -recovered CodingQuarry_transcript_12849-T1, internal, 136868, 137134 -recovered CodingQuarry_transcript_12849-T1, internal, 138160, 138435 -recovered CodingQuarry_transcript_12849-T1, internal, 138670, 138942 -recovered CodingQuarry_transcript_12849-T1, internal, 139085, 139375 -recovered CodingQuarry_transcript_12849-T1, internal, 140235, 140504 -recovered CodingQuarry_transcript_12849-T1, internal, 140772, 142061 -recovered CodingQuarry_transcript_12849-T1, internal, 143001, 143282 -recovered CodingQuarry_transcript_12849-T1, internal, 143535, 143616 -recovered CodingQuarry_transcript_12849-T1, internal, 143732, 143853 -recovered CodingQuarry_transcript_12849-T1, internal, 144229, 144426 -recovered CodingQuarry_transcript_12849-T1, internal, 144588, 144626 -recovered CodingQuarry_transcript_12849-T1, internal, 144706, 144804 -recovered CodingQuarry_transcript_12849-T1, internal, 144946, 145164 -recovered CodingQuarry_transcript_12849-T1, internal, 145255, 145288 -recovered CodingQuarry_transcript_12849-T1, internal, 145395, 145447 -recovered CodingQuarry_transcript_12849-T1, internal, 145548, 145649 -recovered CodingQuarry_transcript_12849-T1, internal, 147615, 147757 -recovered CodingQuarry_transcript_12849-T1, internal, 147919, 148119 -recovered CodingQuarry_transcript_12849-T1, internal, 148210, 148286 -recovered CodingQuarry_transcript_12849-T1, internal, 148616, 148786 -recovered CodingQuarry_transcript_12849-T1, internal, 148903, 149062 -recovered CodingQuarry_transcript_12849-T1, internal, 149307, 149423 -recovered CodingQuarry_transcript_12849-T1, internal, 149562, 149726 -recovered CodingQuarry_transcript_12849-T1, internal, 149810, 149968 -recovered CodingQuarry_transcript_12849-T1, internal, 150513, 150690 -recovered CodingQuarry_transcript_12849-T1, internal, 150959, 151072 -recovered CodingQuarry_transcript_12849-T1, internal, 151243, 151410 -recovered CodingQuarry_transcript_12849-T1, internal, 151543, 151645 -recovered CodingQuarry_transcript_12849-T1, internal, 151934, 152063 -recovered CodingQuarry_transcript_12849-T1, internal, 152313, 152406 -recovered CodingQuarry_transcript_12849-T1, internal, 152816, 152858 Valid prediction for GlimmerHMM_glimmerT_31909-T1 Valid prediction for Augustus_model.g21320.t1 Valid prediction for GlimmerHMM_glimmerT_31884-T1 Valid prediction for Augustus_model.g21321.t1 Valid prediction for GeneMark_model.54794_t Valid prediction for GeneMark_model.54778_t Valid prediction for GeneMark_model.54765_t Valid prediction for snap_scaffold_13-snap.424-T1 Valid prediction for snap_scaffold_13-snap.446-T1 Valid prediction for GlimmerHMM_glimmerT_31883-T1 Valid prediction for GlimmerHMM_glimmerT_31902-T1 Valid prediction for snap_scaffold_13-snap.442-T1 Valid prediction for CodingQuarry_transcript_12854-T1 Valid prediction for GlimmerHMM_glimmerT_31887-T1 Valid prediction for GeneMark_model.54775_t Valid prediction for GlimmerHMM_glimmerT_31882-T1 Valid prediction for GeneMark_model.54766_t Valid prediction for Augustus_model.g21337.t1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.54796_t Valid prediction for GeneMark_model.54803_t Valid prediction for GeneMark_model.54770_t Couldn't classify 119517, 119545 Sorry, prediction pasa_asmbl_9413.p1 fails validation. (CCT) AT 119517-119545 GT AGG (GCC) AG 121967-122064 GT ACG (ATA) AG 122215-122256 GT AGG (ATT) AG 122356-122591 GT TGG (GAA) AG 122792-122876 GT GAG (GCA) AG 122955-123040 GT AGG (GAA) AG 123156-123194 GG AAG add_exon() Sorry, pasa_asmbl_9413.p1 122792-122876-terminal-3 is invalid. -recovered pasa_asmbl_9413.p1, terminal, 122792, 122876 -recovered pasa_asmbl_9413.p1, terminal, 123156, 123194 -recovered pasa_asmbl_9413.p1, internal, 121967, 122064 -recovered pasa_asmbl_9413.p1, internal, 122215, 122256 -recovered pasa_asmbl_9413.p1, internal, 122356, 122591 -recovered pasa_asmbl_9413.p1, internal, 122792, 122876 -recovered pasa_asmbl_9413.p1, internal, 122955, 123040 Valid prediction for GlimmerHMM_glimmerT_31898-T1 Valid prediction for Augustus_model.g21335.t1 Valid prediction for pasa_asmbl_9402.p1 Valid prediction for GeneMark_model.54793_t Valid prediction for GlimmerHMM_glimmerT_31907-T1 Valid prediction for snap_scaffold_13-snap.457-T1 Valid prediction for pasa_asmbl_9421.p1 Valid prediction for snap_scaffold_13-snap.433-T1 Valid prediction for snap_scaffold_13-snap.447-T1 Valid prediction for GlimmerHMM_glimmerT_31899-T1 Valid prediction for CodingQuarry_transcript_12843-T1 Valid prediction for snap_scaffold_13-snap.453-T1 Valid prediction for snap_scaffold_13-snap.460-T1 Valid prediction for GeneMark_model.54799_t Valid prediction for GlimmerHMM_glimmerT_31889-T1 Valid prediction for CodingQuarry_transcript_12861-T1 Valid prediction for pasa_asmbl_9416.p1 Valid prediction for CodingQuarry_transcript_12859-T1 Valid prediction for GeneMark_model.54800_t Valid prediction for GeneMark_model.54785_t Valid prediction for snap_scaffold_13-snap.458-T1 Valid prediction for snap_scaffold_13-snap.431-T1 Valid prediction for snap_scaffold_13-snap.436-T1 Valid prediction for CodingQuarry_transcript_12858-T1 Valid prediction for GlimmerHMM_glimmerT_31893-T1 Valid prediction for snap_scaffold_13-snap.472-T1 Valid prediction for GeneMark_model.54776_t Valid prediction for snap_scaffold_13-snap.463-T1 Valid prediction for Augustus_model.g21334.t1 Valid prediction for CodingQuarry_transcript_12840-T1 Valid prediction for snap_scaffold_13-snap.441-T1 Valid prediction for snap_scaffold_13-snap.462-T1 Valid prediction for CodingQuarry_transcript_12845-T1 Valid prediction for Augustus_model.g21327.t1 Valid prediction for GeneMark_model.54777_t Valid prediction for GlimmerHMM_glimmerT_31903-T1 Valid prediction for Augustus_model.g21330.t1 Valid prediction for HiQ_model.g21340.t1 Valid prediction for GeneMark_model.54805_t Valid prediction for GlimmerHMM_glimmerT_31914-T1 Valid prediction for GlimmerHMM_glimmerT_31916-T1 Valid prediction for snap_scaffold_13-snap.461-T1 Valid prediction for GlimmerHMM_glimmerT_31905-T1 Valid prediction for GeneMark_model.54790_t Valid prediction for GeneMark_model.54781_t Valid prediction for snap_scaffold_13-snap.435-T1 Valid prediction for GlimmerHMM_glimmerT_31913-T1 Valid prediction for snap_scaffold_13-snap.426-T1 Valid prediction for Augustus_model.g21328.t1 Valid prediction for HiQ_model.g21324.t1 Valid prediction for GeneMark_model.54812_t Valid prediction for GeneMark_model.54787_t Valid prediction for GeneMark_model.54783_t Valid prediction for GeneMark_model.54779_t Valid prediction for GlimmerHMM_glimmerT_31890-T1 Valid prediction for GeneMark_model.54801_t Valid prediction for Augustus_model.g21325.t1 Valid prediction for snap_scaffold_13-snap.440-T1 Valid prediction for GlimmerHMM_glimmerT_31892-T1 Valid prediction for HiQ_model.g21332.t1 Valid prediction for snap_scaffold_13-snap.445-T1 Valid prediction for Augustus_model.g21323.t1 Valid prediction for snap_scaffold_13-snap.464-T1 Valid prediction for GlimmerHMM_glimmerT_31896-T1 Valid prediction for pasa_asmbl_9420.p1 Valid prediction for snap_scaffold_13-snap.429-T1 Valid prediction for pasa_asmbl_9412.p1 Couldn't classify 201738, 201987 Sorry, prediction pasa_asmbl_9411.p2 fails validation. (ATG) AC 198816-198871 GT GGG (GGG) AG 201738-201987 GT AGG -recovered pasa_asmbl_9411.p2, initial, 198816, 198871 -recovered pasa_asmbl_9411.p2, internal, 201738, 201987 Valid prediction for snap_scaffold_13-snap.470-T1 Valid prediction for GeneMark_model.54788_t Valid prediction for GlimmerHMM_glimmerT_31886-T1 Valid prediction for GeneMark_model.54797_t Valid prediction for GeneMark_model.54768_t Valid prediction for HiQ_model.g21338.t1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 23315, rend_intergenic: 14151 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38017, rend_intergenic: 34819 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43915, rend_intergenic: 40712 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46901, rend_intergenic: 44228 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57506, rend_intergenic: 56016 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88611, rend_intergenic: 86665 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154373, rend_intergenic: 149155 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 280968 -exon list size: 702 building trellis 0.1 0.3 0.4 0.6 0.7 0.9 1.0 1.1 1.3 1.4 1.6 1.7 1.8 2.0 2.1 2.3 2.4 2.6 2.7 2.8 3.0 3.1 3.3 3.4 3.6 3.7 3.8 4.0 4.1 4.3 4.4 4.5 4.7 4.8 5.0 5.1 5.3 5.4 5.5 5.7 5.8 6.0 6.1 6.2 6.4 6.5 6.7 6.8 7.0 7.1 7.2 7.4 7.5 7.7 7.8 8.0 8.1 8.2 8.4 8.5 8.7 8.8 8.9 9.1 9.2 9.4 9.5 9.7 9.8 9.9 10.1 10.2 10.4 10.5 10.7 10.8 10.9 11.1 11.2 11.4 11.5 11.6 11.8 11.9 12.1 12.2 12.4 12.5 12.6 12.8 12.9 13.1 13.2 13.4 13.5 13.6 13.8 13.9 14.1 14.2 14.3 14.5 14.6 14.8 14.9 15.1 15.2 15.3 15.5 15.6 15.8 15.9 16.1 16.2 16.3 16.5 16.6 16.8 16.9 17.0 17.2 17.3 17.5 17.6 17.8 17.9 18.0 18.2 18.3 18.5 18.6 18.8 18.9 19.0 19.2 19.3 19.5 19.6 19.7 19.9 20.0 20.2 20.3 20.5 20.6 20.7 20.9 21.0 21.2 21.3 21.4 21.6 21.7 21.9 22.0 22.2 22.3 22.4 22.6 22.7 22.9 23.0 23.2 23.3 23.4 23.6 23.7 23.9 24.0 24.1 24.3 24.4 24.6 24.7 24.9 25.0 25.1 25.3 25.4 25.6 25.7 25.9 26.0 26.1 26.3 26.4 26.6 26.7 26.8 27.0 27.1 27.3 27.4 27.6 27.7 27.8 28.0 28.1 28.3 28.4 28.6 28.7 28.8 29.0 29.1 29.3 29.4 29.5 29.7 29.8 30.0 30.1 30.3 30.4 30.5 30.7 30.8 31.0 31.1 31.2 31.4 31.5 31.7 31.8 32.0 32.1 32.2 32.4 32.5 32.7 32.8 33.0 33.1 33.2 33.4 33.5 33.7 33.8 33.9 34.1 34.2 34.4 34.5 34.7 34.8 34.9 35.1 35.2 35.4 35.5 35.7 35.8 35.9 36.1 36.2 36.4 36.5 36.6 36.8 36.9 37.1 37.2 37.4 37.5 37.6 37.8 37.9 38.1 38.2 38.4 38.5 38.6 38.8 38.9 39.1 39.2 39.3 39.5 39.6 39.8 39.9 40.1 40.2 40.3 40.5 40.6 40.8 40.9 41.1 41.2 41.3 41.5 41.6 41.8 41.9 42.0 42.2 42.3 42.5 42.6 42.8 42.9 43.0 43.2 43.3 43.5 43.6 43.8 43.9 44.0 44.2 44.3 44.5 44.6 44.7 44.9 45.0 45.2 45.3 45.5 45.6 45.7 45.9 46.0 46.2 46.3 46.4 46.6 46.7 46.9 47.0 47.2 47.3 47.4 47.6 47.7 47.9 48.0 48.2 48.3 48.4 48.6 48.7 48.9 49.0 49.1 49.3 49.4 49.6 49.7 49.9 50.0 50.1 50.3 50.4 50.6 50.7 50.9 51.0 51.1 51.3 51.4 51.6 51.7 51.8 52.0 52.1 52.3 52.4 52.6 52.7 52.8 53.0 53.1 53.3 53.4 53.6 53.7 53.8 54.0 54.1 54.3 54.4 54.5 54.7 54.8 55.0 55.1 55.3 55.4 55.5 55.7 55.8 56.0 56.1 56.2 56.4 56.5 56.7 56.8 57.0 57.1 57.2 57.4 57.5 57.7 57.8 58.0 58.1 58.2 58.4 58.5 58.7 58.8 58.9 59.1 59.2 59.4 59.5 59.7 59.8 59.9 60.1 60.2 60.4 60.5 60.7 60.8 60.9 61.1 61.2 61.4 61.5 61.6 61.8 61.9 62.1 62.2 62.4 62.5 62.6 62.8 62.9 63.1 63.2 63.4 63.5 63.6 63.8 63.9 64.1 64.2 64.3 64.5 64.6 64.8 64.9 65.1 65.2 65.3 65.5 65.6 65.8 65.9 66.1 66.2 66.3 66.5 66.6 66.8 66.9 67.0 67.2 67.3 67.5 67.6 67.8 67.9 68.0 68.2 68.3 68.5 68.6 68.8 68.9 69.0 69.2 69.3 69.5 69.6 69.7 69.9 70.0 70.2 70.3 70.5 70.6 70.7 70.9 71.0 71.2 71.3 71.4 71.6 71.7 71.9 72.0 72.2 72.3 72.4 72.6 72.7 72.9 73.0 73.2 73.3 73.4 73.6 73.7 73.9 74.0 74.1 74.3 74.4 74.6 74.7 74.9 75.0 75.1 75.3 75.4 75.6 75.7 75.9 76.0 76.1 76.3 76.4 76.6 76.7 76.8 77.0 77.1 77.3 77.4 77.6 77.7 77.8 78.0 78.1 78.3 78.4 78.6 78.7 78.8 79.0 79.1 79.3 79.4 79.5 79.7 79.8 80.0 80.1 80.3 80.4 80.5 80.7 80.8 81.0 81.1 81.2 81.4 81.5 81.7 81.8 82.0 82.1 82.2 82.4 82.5 82.7 82.8 83.0 83.1 83.2 83.4 83.5 83.7 83.8 83.9 84.1 84.2 84.4 84.5 84.7 84.8 84.9 85.1 85.2 85.4 85.5 85.7 85.8 85.9 86.1 86.2 86.4 86.5 86.6 86.8 86.9 87.1 87.2 87.4 87.5 87.6 87.8 87.9 88.1 88.2 88.4 88.5 88.6 88.8 88.9 89.1 89.2 89.3 89.5 89.6 89.8 89.9 90.1 90.2 90.3 90.5 90.6 90.8 90.9 91.1 91.2 91.3 91.5 91.6 91.8 91.9 92.0 92.2 92.3 92.5 92.6 92.8 92.9 93.0 93.2 93.3 93.5 93.6 93.8 93.9 94.0 94.2 94.3 94.5 94.6 94.7 94.9 95.0 95.2 95.3 95.5 95.6 95.7 95.9 96.0 96.2 96.3 96.4 96.6 96.7 96.9 97.0 97.2 97.3 97.4 97.6 97.7 97.9 98.0 98.2 98.3 98.4 98.6 98.7 98.9 99.0 99.1 99.3 99.4 99.6 99.7 99.9 -found 39 predictions from path traversal Error with prediction: snap lend_intergenic: 23315, rend_intergenic: 14151 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38017, rend_intergenic: 34819 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43915, rend_intergenic: 40712 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46901, rend_intergenic: 44228 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57506, rend_intergenic: 56016 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88611, rend_intergenic: 86665 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154373, rend_intergenic: 149155 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 24 predictions persist after filtering for low support