-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_13/scaffold_13_13198861-13393812

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_33367-T1
Valid prediction for GeneMark_model.57060_t
Valid prediction for pasa_asmbl_11352.p1
Valid prediction for GeneMark_model.57033_t
Valid prediction for HiQ_model.g22413.t1
Valid prediction for Augustus_model.g22412.t1
Valid prediction for snap_scaffold_13-snap.2523-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_33372-T1
Valid prediction for Augustus_model.g22419.t1
Valid prediction for GeneMark_model.57028_t
Valid prediction for GeneMark_model.57021_t
Valid prediction for GeneMark_model.57017_t
Valid prediction for snap_scaffold_13-snap.2517-T1
Valid prediction for snap_scaffold_13-snap.2527-T1
Valid prediction for snap_scaffold_13-snap.2501-T1
Valid prediction for snap_scaffold_13-snap.2537-T1
Valid prediction for CodingQuarry_transcript_13248-T1
Valid prediction for CodingQuarry_transcript_13250-T1
Valid prediction for snap_scaffold_13-snap.2514-T1
Valid prediction for GeneMark_model.57010_t
Valid prediction for GlimmerHMM_glimmerT_33350-T1
Valid prediction for GeneMark_model.57041_t
Valid prediction for GlimmerHMM_glimmerT_33363-T1
Valid prediction for snap_scaffold_13-snap.2499-T1
Couldn't classify 74548, 74580
Couldn't classify 79332, 79391
Sorry, prediction pasa_asmbl_11363.p1 fails validation.
(TCA)	 AC	74548-74580	GT	AGG
(GTT)	 AG	74863-74911	GT	TGG
(TGT)	 AG	75348-75403	GT	AGG
(GGC)	 AG	75595-75682	GT	AAG
(ACA)	 AG	76011-76135	GT	AGG
(GTC)	 AG	77351-77455	GT	CGG
(GCT)	 AG	77787-77932	GT	AGG
(AGC)	 AG	78221-78369	GT	CGG
(GTG)	 AG	79013-79200	GT	AGG
(GAC)	 AG	79332-79391	CA	ACC
-recovered pasa_asmbl_11363.p1, internal, 74863, 74911
-recovered pasa_asmbl_11363.p1, internal, 75348, 75403
-recovered pasa_asmbl_11363.p1, internal, 75595, 75682
-recovered pasa_asmbl_11363.p1, internal, 76011, 76135
-recovered pasa_asmbl_11363.p1, internal, 77351, 77455
-recovered pasa_asmbl_11363.p1, internal, 77787, 77932
-recovered pasa_asmbl_11363.p1, internal, 78221, 78369
-recovered pasa_asmbl_11363.p1, internal, 79013, 79200
Valid prediction for GlimmerHMM_glimmerT_33369-T1
Valid prediction for GlimmerHMM_glimmerT_33364-T1
Valid prediction for GeneMark_model.57024_t
Valid prediction for GeneMark_model.57053_t
Valid prediction for Augustus_model.g22421.t1
Couldn't classify 148894, 148899
Sorry, prediction GeneMark_model.57054_t fails validation.
(AGA)	 AG	148894-148899	GT	AGG
(GGA)	 AG	148976-149032	GT	ACG
(AGA)	 AG	149083-149106	GT	GGG
(TGA)	 AG	149138-149233	GC	AAG
(AGA)	 AG	149256-149546	GC	AAG
(AAG)	 AG	149569-149646	GT	GAG
(ACA)	 AG	149683-149727	GT	AGG
(ACA)	 AG	150182-150211	GT	GAG
(GGG)	 AG	150599-150613	GT	GAG
(AGA)	 AG	150661-150681	GT	CCG
(GGG)	 AG	150711-150728	GT	AGG
(GGA)	 AG	150749-150763	GT	GGG
(AGA)	 AG	150791-151421	TT	GAT
-recovered GeneMark_model.57054_t, terminal, 150791, 151421
-recovered GeneMark_model.57054_t, internal, 148894, 148899
-recovered GeneMark_model.57054_t, internal, 148976, 149032
-recovered GeneMark_model.57054_t, internal, 149083, 149106
-recovered GeneMark_model.57054_t, internal, 149138, 149233
-recovered GeneMark_model.57054_t, internal, 149256, 149546
-recovered GeneMark_model.57054_t, internal, 149569, 149646
-recovered GeneMark_model.57054_t, internal, 149683, 149727
-recovered GeneMark_model.57054_t, internal, 150182, 150211
-recovered GeneMark_model.57054_t, internal, 150599, 150613
-recovered GeneMark_model.57054_t, internal, 150661, 150681
-recovered GeneMark_model.57054_t, internal, 150711, 150728
-recovered GeneMark_model.57054_t, internal, 150749, 150763
Valid prediction for HiQ_model.g22415.t1
Couldn't classify 83872, 84091
Sorry, prediction pasa_asmbl_11364.p2 fails validation.
(CAG)	 TC	83872-84091	GT	TGG
(CCA)	 AG	84447-84582	GT	AAG
(CTG)	 AG	84965-84968	AG	GAA
-recovered pasa_asmbl_11364.p2, terminal, 84965, 84968
-recovered pasa_asmbl_11364.p2, internal, 84447, 84582
Valid prediction for snap_scaffold_13-snap.2534-T1
Valid prediction for snap_scaffold_13-snap.2535-T1
Valid prediction for GeneMark_model.57057_t
Valid prediction for GeneMark_model.57048_t
Valid prediction for GeneMark_model.57008_t
Valid prediction for GlimmerHMM_glimmerT_33366-T1
Valid prediction for GlimmerHMM_glimmerT_33368-T1
Valid prediction for snap_scaffold_13-snap.2508-T1
Valid prediction for GeneMark_model.57039_t
Couldn't classify 13098, 13275
Sorry, prediction pasa_asmbl_11666.p1 fails validation.
(ACA)	 CC	13098-13275	GT	AGG
(ACG)	 AG	13718-13759	GT	AGG
(CGT)	 AG	14594-14740	GT	AGG
(GCG)	 AG	14911-15245	GT	AGG
(GTG)	 AG	15500-15596	GT	AGG
(ACA)	 AG	16079-16120	GT	GCG
(CTA)	 AG	16704-16978	GC	GAG
-recovered pasa_asmbl_11666.p1, terminal, 16704, 16978
-recovered pasa_asmbl_11666.p1, internal, 13718, 13759
-recovered pasa_asmbl_11666.p1, internal, 14594, 14740
-recovered pasa_asmbl_11666.p1, internal, 14911, 15245
-recovered pasa_asmbl_11666.p1, internal, 15500, 15596
-recovered pasa_asmbl_11666.p1, internal, 16079, 16120
-recovered pasa_asmbl_11666.p1, internal, 16704, 16978
Couldn't classify 55935, 56027
Couldn't classify 56946, 57342
Sorry, prediction pasa_asmbl_11359.p1 fails validation.
(CAG)	 TG	55935-56027	GT	CTG
(GCC)	 AG	56143-56291	GT	AGG
(GAT)	 AG	56946-57342	GG	CCG
-recovered pasa_asmbl_11359.p1, internal, 56143, 56291
Valid prediction for snap_scaffold_13-snap.2502-T1
Valid prediction for GeneMark_model.57012_t
Valid prediction for snap_scaffold_13-snap.2509-T1
Valid prediction for GeneMark_model.57019_t
Valid prediction for GlimmerHMM_glimmerT_33355-T1
Valid prediction for GeneMark_model.57035_t
Valid prediction for CodingQuarry_transcript_13249-T1
Valid prediction for snap_scaffold_13-snap.2524-T1
Valid prediction for snap_scaffold_13-snap.2506-T1
Valid prediction for GeneMark_model.57063_t
Valid prediction for Augustus_model.g22418.t1
Valid prediction for snap_scaffold_13-snap.2521-T1
Valid prediction for GlimmerHMM_glimmerT_33358-T1
Valid prediction for snap_scaffold_13-snap.2528-T1
Valid prediction for pasa_asmbl_11574.p1
Valid prediction for snap_scaffold_13-snap.2532-T1
Valid prediction for GlimmerHMM_glimmerT_33352-T1
Valid prediction for Augustus_model.g22414.t1
Valid prediction for snap_scaffold_13-snap.2519-T1
Couldn't classify 58722, 58775
Sorry, prediction pasa_asmbl_11360.p1 fails validation.
(CAG)	 GC	58722-58775	GT	AGG
(GGT)	 AG	58948-59089	GT	AGG
(GCG)	 AG	60517-60823	GT	AGG
(GGA)	 AG	60930-61002	CC	AGC
-recovered pasa_asmbl_11360.p1, terminal, 60930, 61002
-recovered pasa_asmbl_11360.p1, internal, 58948, 59089
-recovered pasa_asmbl_11360.p1, internal, 60517, 60823
Valid prediction for GeneMark_model.57052_t
Valid prediction for GeneMark_model.57029_t
Valid prediction for GeneMark_model.57042_t
Valid prediction for GeneMark_model.57023_t
Valid prediction for GlimmerHMM_glimmerT_33348-T1
Valid prediction for GlimmerHMM_glimmerT_33357-T1
Valid prediction for snap_scaffold_13-snap.2529-T1
Valid prediction for GlimmerHMM_glimmerT_33360-T1
Valid prediction for GeneMark_model.57065_t
Valid prediction for GlimmerHMM_glimmerT_33371-T1
Valid prediction for GeneMark_model.57006_t
Valid prediction for GeneMark_model.57026_t
Valid prediction for GeneMark_model.57050_t
Valid prediction for GeneMark_model.57014_t
Valid prediction for GeneMark_model.57031_t
Couldn't classify 162341, 162385
Couldn't classify 166814, 166925
Sorry, prediction pasa_asmbl_11659.p1 fails validation.
(AGA)	 GA	162341-162385	GT	CGG
(AAA)	 AG	163236-163355	GT	TGG
(GTG)	 AG	165489-165655	GT	ATG
(GAA)	 AG	166814-166925	CT	ACC
-recovered pasa_asmbl_11659.p1, internal, 163236, 163355
-recovered pasa_asmbl_11659.p1, internal, 165489, 165655
Valid prediction for Augustus_model.g22420.t1
Valid prediction for Augustus_model.g22416.t1
Valid prediction for GeneMark_model.57068_t
Valid prediction for CodingQuarry_transcript_13247-T1
Valid prediction for GlimmerHMM_glimmerT_33351-T1
Couldn't classify 52085, 52228
Couldn't classify 54053, 54209
Sorry, prediction pasa_asmbl_11358.p2 fails validation.
(TTC)	 CT	52085-52228	GT	AGG
(CTG)	 AG	52476-52682	GT	AGG
(AAC)	 AG	52960-53108	GT	AGG
(GAA)	 AG	54053-54209	GT	AGG
-recovered pasa_asmbl_11358.p2, internal, 52476, 52682
-recovered pasa_asmbl_11358.p2, internal, 52960, 53108
-recovered pasa_asmbl_11358.p2, internal, 54053, 54209
Valid prediction for Augustus_model.g22417.t1
Valid prediction for Augustus_model.g22422.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_33359-T1
Valid prediction for snap_scaffold_13-snap.2503-T1
Valid prediction for GeneMark_model.57013_t
Valid prediction for GeneMark_model.57034_t
Valid prediction for GlimmerHMM_glimmerT_33370-T1
Valid prediction for Augustus_model.g22423.t1
Valid prediction for GeneMark_model.57061_t
Valid prediction for snap_scaffold_13-snap.2513-T1
Valid prediction for GeneMark_model.57011_t
Valid prediction for GeneMark_model.57047_t
Valid prediction for snap_scaffold_13-snap.2507-T1
Valid prediction for snap_scaffold_13-snap.2520-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for GeneMark_model.57067_t
Valid prediction for GlimmerHMM_glimmerT_33365-T1
Valid prediction for GeneMark_model.57056_t
Valid prediction for snap_scaffold_13-snap.2518-T1
Valid prediction for GeneMark_model.57051_t
Valid prediction for GeneMark_model.57009_t
Valid prediction for GeneMark_model.57037_t
Valid prediction for snap_scaffold_13-snap.2531-T1
Valid prediction for snap_scaffold_13-snap.2510-T1
Valid prediction for GeneMark_model.57038_t
Valid prediction for snap_scaffold_13-snap.2530-T1
Valid prediction for GeneMark_model.57007_t
Valid prediction for GlimmerHMM_glimmerT_33361-T1
Valid prediction for snap_scaffold_13-snap.2515-T1
Valid prediction for GeneMark_model.57016_t
Valid prediction for GeneMark_model.57049_t
Valid prediction for GlimmerHMM_glimmerT_33356-T1
Valid prediction for snap_scaffold_13-snap.2526-T1
Valid prediction for GeneMark_model.57040_t
Valid prediction for snap_scaffold_13-snap.2500-T1
Valid prediction for GeneMark_model.57036_t
Valid prediction for snap_scaffold_13-snap.2511-T1
Valid prediction for GlimmerHMM_glimmerT_33349-T1
Valid prediction for snap_scaffold_13-snap.2536-T1
Valid prediction for GeneMark_model.57018_t
Valid prediction for GeneMark_model.57062_t
Valid prediction for GeneMark_model.57064_t
Valid prediction for GeneMark_model.57025_t
Valid prediction for snap_scaffold_13-snap.2516-T1
Valid prediction for GeneMark_model.57027_t
Valid prediction for snap_scaffold_13-snap.2505-T1
Valid prediction for snap_scaffold_13-snap.2504-T1
Valid prediction for GeneMark_model.57015_t
Valid prediction for GeneMark_model.57066_t
Valid prediction for GlimmerHMM_glimmerT_33353-T1
Valid prediction for GeneMark_model.57058_t
Valid prediction for snap_scaffold_13-snap.2533-T1
Valid prediction for snap_scaffold_13-snap.2512-T1
Valid prediction for snap_scaffold_13-snap.2538-T1
Valid prediction for GeneMark_model.57030_t
Valid prediction for GlimmerHMM_glimmerT_33362-T1
Valid prediction for snap_scaffold_13-snap.2525-T1
Valid prediction for GeneMark_model.57020_t
Valid prediction for GeneMark_model.57032_t
Valid prediction for snap_scaffold_13-snap.2522-T1
Valid prediction for GeneMark_model.57022_t
Valid prediction for GlimmerHMM_glimmerT_33354-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11080, rend_intergenic: 5627  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17930, rend_intergenic: 11355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49419, rend_intergenic: 46171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61002, rend_intergenic: 52914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80295, rend_intergenic: 77297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82523, rend_intergenic: 81028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84968, rend_intergenic: 83017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94654, rend_intergenic: 92421  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95582, rend_intergenic: 94953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97361, rend_intergenic: 95769  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111719, rend_intergenic: 103037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129623, rend_intergenic: 111719  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160212, rend_intergenic: 135008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167589, rend_intergenic: 161595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173814, rend_intergenic: 171633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174801, rend_intergenic: 174001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189489, rend_intergenic: 185146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 111863, rend_intergenic: 111860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 194952
-exon list size: 738


building trellis

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54.3    
54.5    
54.6    
54.7    
54.9    
55.0    
55.1    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.1    
56.2    
56.4    
56.5    
56.6    
56.8    
56.9    
57.0    
57.2    
57.3    
57.4    
57.6    
57.7    
57.8    
58.0    
58.1    
58.2    
58.4    
58.5    
58.6    
58.8    
58.9    
59.1    
59.2    
59.3    
59.5    
59.6    
59.7    
59.9    
60.0    
60.1    
60.3    
60.4    
60.5    
60.7    
60.8    
60.9    
61.1    
61.2    
61.4    
61.5    
61.6    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.6    
62.7    
62.8    
63.0    
63.1    
63.2    
63.4    
63.5    
63.6    
63.8    
63.9    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.9    
65.0    
65.1    
65.3    
65.4    
65.5    
65.7    
65.8    
65.9    
66.1    
66.2    
66.4    
66.5    
66.6    
66.8    
66.9    
67.0    
67.2    
67.3    
67.4    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.4    
68.5    
68.6    
68.8    
68.9    
69.1    
69.2    
69.3    
69.5    
69.6    
69.7    
69.9    
70.0    
70.1    
70.3    
70.4    
70.5    
70.7    
70.8    
70.9    
71.1    
71.2    
71.4    
71.5    
71.6    
71.8    
71.9    
72.0    
72.2    
72.3    
72.4    
72.6    
72.7    
72.8    
73.0    
73.1    
73.2    
73.4    
73.5    
73.6    
73.8    
73.9    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.9    
75.0    
75.1    
75.3    
75.4    
75.5    
75.7    
75.8    
75.9    
76.1    
76.2    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.2    
77.3    
77.4    
77.6    
77.7    
77.8    
78.0    
78.1    
78.2    
78.4    
78.5    
78.6    
78.8    
78.9    
79.1    
79.2    
79.3    
79.5    
79.6    
79.7    
79.9    
80.0    
80.1    
80.3    
80.4    
80.5    
80.7    
80.8    
80.9    
81.1    
81.2    
81.4    
81.5    
81.6    
81.8    
81.9    
82.0    
82.2    
82.3    
82.4    
82.6    
82.7    
82.8    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.8    
83.9    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.9    
85.0    
85.1    
85.3    
85.4    
85.5    
85.7    
85.8    
85.9    
86.1    
86.2    
86.4    
86.5    
86.6    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.4    
88.5    
88.6    
88.8    
88.9    
89.1    
89.2    
89.3    
89.5    
89.6    
89.7    
89.9    
90.0    
90.1    
90.3    
90.4    
90.5    
90.7    
90.8    
90.9    
91.1    
91.2    
91.4    
91.5    
91.6    
91.8    
91.9    
92.0    
92.2    
92.3    
92.4    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.4    
93.5    
93.6    
93.8    
93.9    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.3    
95.4    
95.5    
95.7    
95.8    
95.9    
96.1    
96.2    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.2    
97.3    
97.4    
97.6    
97.7    
97.8    
98.0    
98.1    
98.2    
98.4    
98.5    
98.6    
98.8    
98.9    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 11080, rend_intergenic: 5627  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17930, rend_intergenic: 11355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49419, rend_intergenic: 46171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61002, rend_intergenic: 52914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80295, rend_intergenic: 77297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82523, rend_intergenic: 81028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84968, rend_intergenic: 83017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94654, rend_intergenic: 92421  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95582, rend_intergenic: 94953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97361, rend_intergenic: 95769  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111719, rend_intergenic: 103037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129623, rend_intergenic: 111719  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160212, rend_intergenic: 135008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167589, rend_intergenic: 161595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173814, rend_intergenic: 171633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174801, rend_intergenic: 174001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189489, rend_intergenic: 185146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 111863, rend_intergenic: 111860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support