-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_13/scaffold_13_11156674-11363323

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_13-snap.2075-T1
Valid prediction for snap_scaffold_13-snap.2068-T1
Valid prediction for snap_scaffold_13-snap.2083-T1
Valid prediction for GeneMark_model.56446_t
Valid prediction for GeneMark_model.56459_t
Couldn't classify 40030, 40116
Sorry, prediction pasa_asmbl_11238.p1 fails validation.
(GAG)	 CA	40030-40116	GT	TGG
(GAG)	 AG	40431-40551	GC	AGG
(GTG)	 AG	40673-40767	GT	AGG
(CCC)	 AG	41005-41125	GT	AGG
(CTT)	 AG	41589-41677	GT	AGG
(GTC)	 AG	41900-41989	GA	AAG
add_exon() Sorry, pasa_asmbl_11238.p1 40431-40551-terminal-3 is invalid.
-recovered pasa_asmbl_11238.p1, terminal, 40431, 40551
add_exon() Sorry, pasa_asmbl_11238.p1 41005-41125-terminal-3 is invalid.
-recovered pasa_asmbl_11238.p1, terminal, 41005, 41125
-recovered pasa_asmbl_11238.p1, terminal, 41900, 41989
-recovered pasa_asmbl_11238.p1, internal, 40431, 40551
-recovered pasa_asmbl_11238.p1, internal, 40673, 40767
-recovered pasa_asmbl_11238.p1, internal, 41005, 41125
-recovered pasa_asmbl_11238.p1, internal, 41589, 41677
Valid prediction for GeneMark_model.56480_t
Valid prediction for GeneMark_model.56477_t
Valid prediction for GlimmerHMM_glimmerT_33100-T1
Valid prediction for GlimmerHMM_glimmerT_33102-T1
Valid prediction for snap_scaffold_13-snap.2093-T1
Valid prediction for HiQ_model.g22246.t1
Valid prediction for snap_scaffold_13-snap.2069-T1
Valid prediction for GeneMark_model.56465_t
Valid prediction for GlimmerHMM_glimmerT_33090-T1
Valid prediction for GlimmerHMM_glimmerT_33103-T1
Valid prediction for GeneMark_model.56467_t
Valid prediction for GeneMark_model.56449_t
Valid prediction for GlimmerHMM_glimmerT_33094-T1
Valid prediction for GlimmerHMM_glimmerT_33091-T1
Valid prediction for Augustus_model.g22236.t1
Couldn't classify 50536, 50644
Sorry, prediction pasa_asmbl_11239.p2 fails validation.
(TGG)	 TG	50536-50644	GT	AGG
(AGC)	 AG	50858-51010	GT	GGG
(TGT)	 AG	51233-51399	TG	GAT
-recovered pasa_asmbl_11239.p2, terminal, 51233, 51399
-recovered pasa_asmbl_11239.p2, internal, 50858, 51010
Valid prediction for GlimmerHMM_glimmerT_33110-T1
Valid prediction for GeneMark_model.56472_t
Valid prediction for HiQ_model.g22247.t1
Valid prediction for GeneMark_model.56488_t
Valid prediction for GlimmerHMM_glimmerT_33085-T1
Valid prediction for snap_scaffold_13-snap.2102-T1
Valid prediction for GeneMark_model.56504_t
Valid prediction for GeneMark_model.56435_t
Valid prediction for Augustus_model.g22227.t1
Valid prediction for snap_scaffold_13-snap.2100-T1
Valid prediction for Augustus_model.g22231.t1
Valid prediction for snap_scaffold_13-snap.2098-T1
Valid prediction for HiQ_model.g22232.t1
Valid prediction for GeneMark_model.56475_t
Valid prediction for snap_scaffold_13-snap.2067-T1
Valid prediction for GeneMark_model.56470_t
Valid prediction for snap_scaffold_13-snap.2072-T1
Valid prediction for GeneMark_model.56448_t
Valid prediction for Augustus_model.g22234.t1
Valid prediction for snap_scaffold_13-snap.2070-T1
Valid prediction for GlimmerHMM_glimmerT_33086-T1
Valid prediction for GeneMark_model.56461_t
Valid prediction for GlimmerHMM_glimmerT_33088-T1
Valid prediction for GlimmerHMM_glimmerT_33089-T1
Valid prediction for GeneMark_model.56491_t
Valid prediction for snap_scaffold_13-snap.2063-T1
Couldn't classify 52071, 52106
Sorry, prediction pasa_asmbl_11240.p1 fails validation.
(CGG)	 GA	52071-52106	GT	AGG
(CTT)	 AG	52331-52751	GT	AGG
(GGA)	 AG	52841-53025	GT	AGG
(TAT)	 AG	53401-53778	GG	GAG
-recovered pasa_asmbl_11240.p1, terminal, 53401, 53778
-recovered pasa_asmbl_11240.p1, internal, 52331, 52751
-recovered pasa_asmbl_11240.p1, internal, 52841, 53025
Valid prediction for Augustus_model.g22243.t1
Valid prediction for GlimmerHMM_glimmerT_33081-T1
Couldn't classify 101181, 101250
Sorry, prediction pasa_asmbl_11245.p1 fails validation.
(CCT)	 AC	101181-101250	GT	TGG
(AGT)	 AG	103016-103251	GT	AGG
(ATT)	 AG	103776-103850	GT	AGG
(GCG)	 AG	104141-104214	GT	AGG
(GGT)	 AG	104487-104607	GC	GAG
-recovered pasa_asmbl_11245.p1, terminal, 104487, 104607
-recovered pasa_asmbl_11245.p1, internal, 103016, 103251
-recovered pasa_asmbl_11245.p1, internal, 103776, 103850
-recovered pasa_asmbl_11245.p1, internal, 104141, 104214
-recovered pasa_asmbl_11245.p1, internal, 104487, 104607
Valid prediction for GlimmerHMM_glimmerT_33098-T1
Valid prediction for GlimmerHMM_glimmerT_33087-T1
Valid prediction for Augustus_model.g22233.t1
Couldn't classify 187456, 187532
Couldn't classify 187739, 187883
Sorry, prediction pasa_asmbl_11247.p1 fails validation.
(ATG)	 AA	184992-185172	GT	ATG
(ATA)	 AG	185570-185669	GT	GTG
(GTA)	 AG	185850-185997	GT	AGG
(GTT)	 AG	186178-186338	GC	AGG
(TTT)	 AG	186649-186769	GT	AGG
(CTG)	 AG	187074-187279	GT	AGG
(GCC)	 AG	187456-187532	AT	TCA
(AGA)	 AC	187739-187883	GT	AGG
(GGT)	 AG	188141-188318	GC	GAG
-recovered pasa_asmbl_11247.p1, initial, 184992, 185172
add_exon() Sorry, pasa_asmbl_11247.p1 186178-186338-terminal-2 is invalid.
-recovered pasa_asmbl_11247.p1, terminal, 186178, 186338
-recovered pasa_asmbl_11247.p1, terminal, 188141, 188318
-recovered pasa_asmbl_11247.p1, internal, 185570, 185669
-recovered pasa_asmbl_11247.p1, internal, 185850, 185997
-recovered pasa_asmbl_11247.p1, internal, 186178, 186338
-recovered pasa_asmbl_11247.p1, internal, 186649, 186769
-recovered pasa_asmbl_11247.p1, internal, 187074, 187279
-recovered pasa_asmbl_11247.p1, internal, 188141, 188318
Valid prediction for Augustus_model.g22235.t1
Valid prediction for GeneMark_model.56454_t
Valid prediction for GeneMark_model.56497_t
Valid prediction for GeneMark_model.56451_t
Valid prediction for snap_scaffold_13-snap.2101-T1
Valid prediction for snap_scaffold_13-snap.2062-T1
Valid prediction for Augustus_model.g22228.t1
Valid prediction for GlimmerHMM_glimmerT_33092-T1
Valid prediction for snap_scaffold_13-snap.2057-T1
Valid prediction for GeneMark_model.56437_t
Valid prediction for snap_scaffold_13-snap.2071-T1
Valid prediction for GeneMark_model.56495_t
Valid prediction for GeneMark_model.56478_t
Valid prediction for GeneMark_model.56441_t
Valid prediction for GeneMark_model.56443_t
Valid prediction for GeneMark_model.56501_t
Valid prediction for snap_scaffold_13-snap.2074-T1
Valid prediction for GeneMark_model.56485_t
Valid prediction for GeneMark_model.56474_t
Valid prediction for CodingQuarry_transcript_13206-T1
Couldn't classify 73470, 73658
Sorry, prediction pasa_asmbl_11242.p1 fails validation.
(GTT)	 AG	73470-73658	GT	AGG
(GTT)	 AG	74790-74978	GT	AGG
(GAG)	 AG	75212-75412	CA	GAC
-recovered pasa_asmbl_11242.p1, terminal, 75212, 75412
-recovered pasa_asmbl_11242.p1, internal, 73470, 73658
-recovered pasa_asmbl_11242.p1, internal, 74790, 74978
Valid prediction for GeneMark_model.56484_t
Valid prediction for Augustus_model.g22225.t1
Valid prediction for GeneMark_model.56502_t
Valid prediction for snap_scaffold_13-snap.2060-T1
Valid prediction for GlimmerHMM_glimmerT_33111-T1
Valid prediction for GlimmerHMM_glimmerT_33084-T1
Valid prediction for GlimmerHMM_glimmerT_33093-T1
Valid prediction for snap_scaffold_13-snap.2086-T1
Valid prediction for Augustus_model.g22229.t1
Valid prediction for GeneMark_model.56457_t
Valid prediction for GeneMark_model.56493_t
Valid prediction for snap_scaffold_13-snap.2079-T1
Valid prediction for snap_scaffold_13-snap.2073-T1
Valid prediction for GeneMark_model.56482_t
Valid prediction for snap_scaffold_13-snap.2078-T1
Valid prediction for snap_scaffold_13-snap.2095-T1
Valid prediction for GeneMark_model.56463_t
Valid prediction for GeneMark_model.56456_t
Valid prediction for snap_scaffold_13-snap.2059-T1
Valid prediction for GlimmerHMM_glimmerT_33104-T1
Valid prediction for GlimmerHMM_glimmerT_33107-T1
Valid prediction for GeneMark_model.56439_t
Couldn't classify 64598, 64781
Sorry, prediction pasa_asmbl_11241.p1 fails validation.
(ATG)	 CC	61809-61883	GT	AGG
(GTG)	 AG	62081-62925	GT	AGG
(GTC)	 AG	64598-64781	GG	CAG
-recovered pasa_asmbl_11241.p1, initial, 61809, 61883
-recovered pasa_asmbl_11241.p1, internal, 62081, 62925
Valid prediction for snap_scaffold_13-snap.2097-T1
Valid prediction for Augustus_model.g22237.t1
Valid prediction for HiQ_model.g22230.t1
Valid prediction for Augustus_model.g22240.t1
Valid prediction for snap_scaffold_13-snap.2085-T1
Valid prediction for snap_scaffold_13-snap.2082-T1
Valid prediction for GeneMark_model.56452_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g22249.t1
Valid prediction for snap_scaffold_13-snap.2087-T1
Valid prediction for GeneMark_model.56458_t
Valid prediction for snap_scaffold_13-snap.2061-T1
Valid prediction for GlimmerHMM_glimmerT_33112-T1
Valid prediction for GeneMark_model.56471_t
Valid prediction for snap_scaffold_13-snap.2088-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.56498_t
Valid prediction for pasa_asmbl_10308.p1
Valid prediction for GlimmerHMM_glimmerT_33108-T1
Valid prediction for snap_scaffold_13-snap.2094-T1
Valid prediction for GeneMark_model.56494_t
Valid prediction for GlimmerHMM_glimmerT_33097-T1
Valid prediction for GeneMark_model.56445_t
Valid prediction for GeneMark_model.56464_t
Valid prediction for snap_scaffold_13-snap.2090-T1
Valid prediction for GeneMark_model.56489_t
Valid prediction for GeneMark_model.56442_t
Valid prediction for snap_scaffold_13-snap.2104-T1
Valid prediction for Augustus_model.g22248.t1
Valid prediction for GeneMark_model.56483_t
Valid prediction for snap_scaffold_13-snap.2064-T1
Valid prediction for GeneMark_model.56486_t
Valid prediction for GlimmerHMM_glimmerT_33082-T1
Valid prediction for snap_scaffold_13-snap.2065-T1
Valid prediction for GlimmerHMM_glimmerT_33101-T1
Valid prediction for GeneMark_model.56503_t
Valid prediction for snap_scaffold_13-snap.2105-T1
Valid prediction for GeneMark_model.56487_t
Valid prediction for HiQ_model.g22226.t1
Valid prediction for GeneMark_model.56496_t
Valid prediction for snap_scaffold_13-snap.2084-T1
Valid prediction for Augustus_model.g22238.t1
Valid prediction for CodingQuarry_transcript_13207-T1
Valid prediction for CodingQuarry_transcript_13205-T1
Valid prediction for snap_scaffold_13-snap.2092-T1
Valid prediction for GeneMark_model.56462_t
Valid prediction for GeneMark_model.56440_t
Valid prediction for GeneMark_model.56506_t
Valid prediction for snap_scaffold_13-snap.2103-T1
Valid prediction for GeneMark_model.56492_t
Valid prediction for GlimmerHMM_glimmerT_33113-T1
Valid prediction for Augustus_model.g22245.t1
Valid prediction for Augustus_model.g22239.t1
Valid prediction for GlimmerHMM_glimmerT_33109-T1
Valid prediction for GlimmerHMM_glimmerT_33095-T1
Valid prediction for GeneMark_model.56476_t
Valid prediction for HiQ_model.g22244.t1
Valid prediction for GeneMark_model.56490_t
Valid prediction for GeneMark_model.56436_t
Valid prediction for GeneMark_model.56438_t
Valid prediction for snap_scaffold_13-snap.2081-T1
Valid prediction for snap_scaffold_13-snap.2096-T1
Valid prediction for snap_scaffold_13-snap.2058-T1
Valid prediction for GeneMark_model.56479_t
Valid prediction for GeneMark_model.56473_t
Valid prediction for GeneMark_model.56466_t
Valid prediction for GlimmerHMM_glimmerT_33099-T1
Valid prediction for GeneMark_model.56481_t
Valid prediction for GlimmerHMM_glimmerT_33105-T1
Valid prediction for GlimmerHMM_glimmerT_33083-T1
Valid prediction for GeneMark_model.56444_t
Valid prediction for CodingQuarry_transcript_13208-T1
Valid prediction for snap_scaffold_13-snap.2091-T1
Valid prediction for pasa_asmbl_10035.p2
Valid prediction for GeneMark_model.56468_t
Valid prediction for GeneMark_model.56500_t
Valid prediction for GeneMark_model.56447_t
Valid prediction for snap_scaffold_13-snap.2077-T1
Couldn't classify 90089, 90220
Couldn't classify 90864, 90917
Sorry, prediction pasa_asmbl_10336.p1 fails validation.
(GAC)	 AG	90089-90220	GT	AGG
(ACG)	 AG	90456-90535	GT	AGG
(CTA)	 AG	90630-90753	GT	CGG
(GTT)	 AG	90864-90917	AA	GAA
-recovered pasa_asmbl_10336.p1, internal, 90089, 90220
-recovered pasa_asmbl_10336.p1, internal, 90456, 90535
-recovered pasa_asmbl_10336.p1, internal, 90630, 90753
Valid prediction for GeneMark_model.56453_t
Valid prediction for snap_scaffold_13-snap.2076-T1
Valid prediction for snap_scaffold_13-snap.2080-T1
Valid prediction for Augustus_model.g22241.t1
Valid prediction for GeneMark_model.56499_t
Couldn't classify 91400, 91446
Sorry, prediction pasa_asmbl_10037.p1 fails validation.
(TAC)	 GC	91400-91446	GT	GGG
(GTA)	 AG	91654-91753	GT	AGG
(GTA)	 AG	91860-91979	GT	AGG
(GTT)	 AG	92110-92196	GG	GAG
-recovered pasa_asmbl_10037.p1, terminal, 92110, 92196
-recovered pasa_asmbl_10037.p1, internal, 91654, 91753
-recovered pasa_asmbl_10037.p1, internal, 91860, 91979
Valid prediction for GlimmerHMM_glimmerT_33106-T1
Valid prediction for GeneMark_model.56455_t
Couldn't classify 88729, 88869
Sorry, prediction pasa_asmbl_10039.p1 fails validation.
(ATG)	 AG	88439-88645	GT	AGG
(AGC)	 AG	88729-88869	GA	AGG
-recovered pasa_asmbl_10039.p1, initial, 88439, 88645
-recovered pasa_asmbl_10039.p1, internal, 88439, 88645
Valid prediction for GlimmerHMM_glimmerT_33096-T1
Valid prediction for snap_scaffold_13-snap.2089-T1
Valid prediction for snap_scaffold_13-snap.2066-T1
Valid prediction for Augustus_model.g22242.t1
Valid prediction for GeneMark_model.56469_t
Valid prediction for GeneMark_model.56460_t
Valid prediction for snap_scaffold_13-snap.2099-T1
Valid prediction for GeneMark_model.56505_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20697, rend_intergenic: 16965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41989, rend_intergenic: 31536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100538, rend_intergenic: 85471  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103232, rend_intergenic: 100989  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110028, rend_intergenic: 103667  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160793, rend_intergenic: 120872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167007, rend_intergenic: 161531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199665, rend_intergenic: 190798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202442, rend_intergenic: 199853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 206650
-exon list size: 892


building trellis

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38.9    
39.0    
39.1    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.6    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.4    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.6    
99.7    
99.8    
99.9    
-found 50 predictions from path traversal
Error with prediction: snap lend_intergenic: 20697, rend_intergenic: 16965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41989, rend_intergenic: 31536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100538, rend_intergenic: 85471  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103232, rend_intergenic: 100989  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110028, rend_intergenic: 103667  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160793, rend_intergenic: 120872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167007, rend_intergenic: 161531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199665, rend_intergenic: 190798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202442, rend_intergenic: 199853  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 28 predictions persist after filtering for low support