-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1299

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109166_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 146, 160
Sorry, prediction GeneMark_model.109167_t fails validation.
(AGA)	 AG	146-160	GT	GGG
(ATG)	 AG	182-358	GT	GGG
(GGA)	 AG	381-410	GT	AGG
(AGA)	 AG	530-535	GT	TGG
(GGG)	 AG	566-574	GT	GAG
(AGA)	 AG	602-607	GT	GGG
(GAG)	 AG	629-656	AG	GAA
add_exon() Sorry, GeneMark_model.109167_t 182-358-initial-1 is invalid.
-recovered GeneMark_model.109167_t, initial, 182, 358
add_exon() Sorry, GeneMark_model.109167_t 566-574-terminal-1 is invalid.
-recovered GeneMark_model.109167_t, terminal, 566, 574
-recovered GeneMark_model.109167_t, terminal, 629, 656
-recovered GeneMark_model.109167_t, internal, 146, 160
-recovered GeneMark_model.109167_t, internal, 182, 358
-recovered GeneMark_model.109167_t, internal, 381, 410
-recovered GeneMark_model.109167_t, internal, 530, 535
-recovered GeneMark_model.109167_t, internal, 566, 574
-recovered GeneMark_model.109167_t, internal, 602, 607

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2732
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support