-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1297

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 581, 678
Couldn't classify 1658, 1762
Sorry, prediction snap_scaffold_1297-snap.1-T1 fails validation.
(GAT)	 AG	581-678	GT	AGG
(GGA)	 AG	708-780	GT	TGG
(ACT)	 AG	1658-1762	GT	TGG
-recovered snap_scaffold_1297-snap.1-T1, internal, 581, 678
-recovered snap_scaffold_1297-snap.1-T1, internal, 708, 780
-recovered snap_scaffold_1297-snap.1-T1, internal, 1658, 1762

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109164_t
Couldn't classify 119, 180
Sorry, prediction GeneMark_model.109165_t fails validation.
(GAG)	 AG	119-180	GT	GGG
(GGA)	 AG	206-287	GT	AGG
(GAG)	 AG	311-332	GT	AGG
(GAG)	 AG	356-372	GT	GAG
(GAG)	 AG	401-632	GT	AGG
(GCT)	 AG	1018-1107	TA	AAT
-recovered GeneMark_model.109165_t, terminal, 1018, 1107
-recovered GeneMark_model.109165_t, internal, 119, 180
-recovered GeneMark_model.109165_t, internal, 206, 287
-recovered GeneMark_model.109165_t, internal, 311, 332
-recovered GeneMark_model.109165_t, internal, 356, 372
-recovered GeneMark_model.109165_t, internal, 401, 632

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2735
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support