-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1296

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 152, 181
Sorry, prediction GeneMark_model.109163_t fails validation.
(AGA)	 AG	152-181	GT	CAG
(GTG)	 AG	1372-1386	GT	GGG
(GTT)	 AG	1415-1429	GT	GGG
(GGA)	 AG	1539-1547	GT	AGG
(CGA)	 AG	1569-1748	GT	AGG
(AGA)	 AG	1770-1862	GT	AGG
(GGA)	 AG	1885-1914	GT	AGG
(GCA)	 AG	1948-2016	GT	AAG
(GGA)	 AG	2041-2074	GC	AGG
-recovered GeneMark_model.109163_t, terminal, 1885, 1914
-recovered GeneMark_model.109163_t, terminal, 2041, 2074
-recovered GeneMark_model.109163_t, internal, 152, 181
-recovered GeneMark_model.109163_t, internal, 1372, 1386
-recovered GeneMark_model.109163_t, internal, 1415, 1429
-recovered GeneMark_model.109163_t, internal, 1539, 1547
-recovered GeneMark_model.109163_t, internal, 1569, 1748
-recovered GeneMark_model.109163_t, internal, 1770, 1862
-recovered GeneMark_model.109163_t, internal, 1885, 1914
-recovered GeneMark_model.109163_t, internal, 1948, 2016
-recovered GeneMark_model.109163_t, internal, 2041, 2074

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2741
-exon list size: 18


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support