-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1295

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1, 74
Couldn't classify 2535, 2645
Sorry, prediction Augustus_model.g41611.t1 fails validation.
(GAT)	 CA	1-74	GT	AGG
(GTT)	 AG	361-447	GT	CTG
(GTA)	 AG	546-684	GT	AGG
(GTG)	 AG	904-1017	GT	AGG
(TAC)	 AG	1366-1528	GT	AGG
(AGG)	 AG	1644-1709	GT	AGG
(GAC)	 AG	1819-1891	GT	AAG
(GGT)	 AG	2039-2123	GT	AGG
(GTG)	 AG	2535-2645	GT	TTG
-recovered Augustus_model.g41611.t1, internal, 361, 447
-recovered Augustus_model.g41611.t1, internal, 546, 684
-recovered Augustus_model.g41611.t1, internal, 904, 1017
-recovered Augustus_model.g41611.t1, internal, 1366, 1528
-recovered Augustus_model.g41611.t1, internal, 1644, 1709
-recovered Augustus_model.g41611.t1, internal, 1819, 1891
-recovered Augustus_model.g41611.t1, internal, 2039, 2123
-recovered Augustus_model.g41611.t1, internal, 2535, 2645
Couldn't classify 7, 74
Couldn't classify 2535, 2645
Sorry, prediction pasa_asmbl_9258.p1 fails validation.
(CTA)	 TC	7-74	GT	AGG
(GTT)	 AG	361-447	GT	CTG
(GTA)	 AG	546-684	GT	AGG
(GTG)	 AG	904-1017	GT	AGG
(TAC)	 AG	1366-1528	GT	AGG
(AGG)	 AG	1644-1709	GT	AGG
(GAC)	 AG	1819-1891	GT	AAG
(GGT)	 AG	2039-2123	GT	AGG
(GTG)	 AG	2535-2645	GT	TTG
-recovered pasa_asmbl_9258.p1, internal, 361, 447
-recovered pasa_asmbl_9258.p1, internal, 546, 684
-recovered pasa_asmbl_9258.p1, internal, 904, 1017
-recovered pasa_asmbl_9258.p1, internal, 1366, 1528
-recovered pasa_asmbl_9258.p1, internal, 1644, 1709
-recovered pasa_asmbl_9258.p1, internal, 1819, 1891
-recovered pasa_asmbl_9258.p1, internal, 2039, 2123
-recovered pasa_asmbl_9258.p1, internal, 2535, 2645
Valid prediction for GlimmerHMM_glimmerT_62566-T1
Valid prediction for GeneMark_model.109161_t
Couldn't classify 2535, 2645
Sorry, prediction snap_scaffold_1295-snap.1-T1 fails validation.
(ATG)	 TA	10-74	GT	AGG
(GTT)	 AG	361-447	GT	CTG
(GTA)	 AG	546-684	GT	AGG
(GTG)	 AG	904-1017	GT	AGG
(TAC)	 AG	1366-1528	GT	AGG
(AGG)	 AG	1644-1709	GT	AGG
(GAC)	 AG	1819-1891	GT	AAG
(GGT)	 AG	2039-2123	GT	AGG
(GTG)	 AG	2535-2645	GT	TTG
-recovered snap_scaffold_1295-snap.1-T1, initial, 10, 74
-recovered snap_scaffold_1295-snap.1-T1, internal, 361, 447
-recovered snap_scaffold_1295-snap.1-T1, internal, 546, 684
-recovered snap_scaffold_1295-snap.1-T1, internal, 904, 1017
-recovered snap_scaffold_1295-snap.1-T1, internal, 1366, 1528
-recovered snap_scaffold_1295-snap.1-T1, internal, 1644, 1709
-recovered snap_scaffold_1295-snap.1-T1, internal, 1819, 1891
-recovered snap_scaffold_1295-snap.1-T1, internal, 2039, 2123
-recovered snap_scaffold_1295-snap.1-T1, internal, 2535, 2645
Couldn't classify 2535, 2645
Sorry, prediction GlimmerHMM_glimmerT_62567-T1 fails validation.
(ATG)	 AA	2022-2123	GT	AGG
(GTG)	 AG	2535-2645	GT	TTG
-recovered GlimmerHMM_glimmerT_62567-T1, initial, 2022, 2123
-recovered GlimmerHMM_glimmerT_62567-T1, internal, 2535, 2645
Couldn't classify 2535, 2645
Sorry, prediction GeneMark_model.109162_t fails validation.
(ATG)	 AA	2022-2123	GT	AGG
(GTG)	 AG	2535-2645	GT	TTG
-recovered GeneMark_model.109162_t, initial, 2022, 2123
-recovered GeneMark_model.109162_t, internal, 2535, 2645

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2741
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support