-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1294

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 382, 511
Couldn't classify 1332, 1602
Sorry, prediction snap_scaffold_1294-snap.1-T1 fails validation.
(AGG)	 AG	382-511	GT	ATG
(CTT)	 AG	1332-1602	GT	AGG
-recovered snap_scaffold_1294-snap.1-T1, internal, 382, 511
-recovered snap_scaffold_1294-snap.1-T1, internal, 1332, 1602
Couldn't classify 1625, 1801
Sorry, prediction GeneMark_model.109160_t fails validation.
(ATG)	 AG	888-896	GT	GGG
(AAC)	 AG	1167-1211	GT	CTG
(CAC)	 AG	1237-1409	GT	GCG
(GGA)	 AG	1453-1602	GT	AGG
(AGA)	 AG	1625-1801	GT	CTG
-recovered GeneMark_model.109160_t, initial, 888, 896
-recovered GeneMark_model.109160_t, internal, 888, 896
-recovered GeneMark_model.109160_t, internal, 1167, 1211
-recovered GeneMark_model.109160_t, internal, 1237, 1409
-recovered GeneMark_model.109160_t, internal, 1453, 1602
-recovered GeneMark_model.109160_t, internal, 1625, 1801

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62565-T1
Couldn't classify 2671, 2736
Sorry, prediction GeneMark_model.109159_t fails validation.
(ATG)	 TT	2129-2145	GT	AAG
(GGG)	 AG	2314-2463	GT	AGG
(TGG)	 AG	2671-2736	GT	GAG
-recovered GeneMark_model.109159_t, initial, 2129, 2145
-recovered GeneMark_model.109159_t, internal, 2314, 2463
-recovered GeneMark_model.109159_t, internal, 2671, 2736

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2745
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support