-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1291

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 40, 237
Sorry, prediction GeneMark_model.109157_t fails validation.
(AGA)	 AG	40-237	GT	AAG
(CCT)	 AG	1209-1277	GT	GTG
(CCT)	 AG	1301-1321	GT	CAG
(CCT)	 AG	1347-1367	GT	CAG
(CCT)	 AG	1393-1413	GT	CAG
(AGG)	 AG	1607-1612	GT	AGG
(GGG)	 AG	1634-1639	GT	AAG
(GAG)	 AG	1669-1765	CC	GAC
-recovered GeneMark_model.109157_t, terminal, 1669, 1765
-recovered GeneMark_model.109157_t, internal, 40, 237
-recovered GeneMark_model.109157_t, internal, 1209, 1277
-recovered GeneMark_model.109157_t, internal, 1301, 1321
-recovered GeneMark_model.109157_t, internal, 1347, 1367
-recovered GeneMark_model.109157_t, internal, 1393, 1413
-recovered GeneMark_model.109157_t, internal, 1607, 1612
-recovered GeneMark_model.109157_t, internal, 1634, 1639
Couldn't classify 32, 237
Sorry, prediction snap_scaffold_1291-snap.1-T1 fails validation.
(AGA)	 AG	32-237	GT	AAG
(ATG)	 AG	1484-1612	GT	AGG
(GCC)	 AG	2110-2180	GG	AGG
add_exon() Sorry, snap_scaffold_1291-snap.1-T1 1484-1612-initial-1 is invalid.
-recovered snap_scaffold_1291-snap.1-T1, initial, 1484, 1612
-recovered snap_scaffold_1291-snap.1-T1, terminal, 2110, 2180
-recovered snap_scaffold_1291-snap.1-T1, internal, 32, 237
-recovered snap_scaffold_1291-snap.1-T1, internal, 1484, 1612

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1402, 1881
Sorry, prediction snap_scaffold_1291-snap.2-T1 fails validation.
(ATG)	 AC	633-656	GT	GGG
(GCT)	 AG	1402-1881	GT	ATG
-recovered snap_scaffold_1291-snap.2-T1, initial, 633, 656
-recovered snap_scaffold_1291-snap.2-T1, internal, 1402, 1881

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2180, rend_intergenic: 868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2748
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2180, rend_intergenic: 868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support