-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1290

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 384, 512
Sorry, prediction Augustus_model.g41610.t1 fails validation.
(CTA)	 AG	384-512	GT	AGG
(GAT)	 AG	1299-1428	GT	ATG
(AAC)	 AG	1818-1971	GT	AGG
(TTA)	 AG	2379-2500	AT	AGA
-recovered Augustus_model.g41610.t1, terminal, 2379, 2500
-recovered Augustus_model.g41610.t1, internal, 384, 512
-recovered Augustus_model.g41610.t1, internal, 1299, 1428
-recovered Augustus_model.g41610.t1, internal, 1818, 1971
Couldn't classify 2379, 2469
Sorry, prediction snap_scaffold_1290-snap.1-T1 fails validation.
(ATG)	 CG	205-290	GT	CGG
(CTA)	 AG	384-512	GT	AGG
(GAT)	 AG	1299-1428	GT	ATG
(AAC)	 AG	1818-1971	GT	AGG
(TTA)	 AG	2379-2469	GT	GGG
-recovered snap_scaffold_1290-snap.1-T1, initial, 205, 290
-recovered snap_scaffold_1290-snap.1-T1, internal, 384, 512
-recovered snap_scaffold_1290-snap.1-T1, internal, 1299, 1428
-recovered snap_scaffold_1290-snap.1-T1, internal, 1818, 1971
-recovered snap_scaffold_1290-snap.1-T1, internal, 2379, 2469
Couldn't classify 384, 512
Couldn't classify 2379, 2469
Sorry, prediction GeneMark_model.109156_t fails validation.
(CTA)	 AG	384-512	GT	AGG
(GAG)	 AG	837-848	GT	AGG
(GGA)	 AG	873-908	GT	AGG
(AGA)	 AG	933-938	GT	AGG
(GGG)	 AG	963-971	GT	AGG
(GGG)	 AG	992-1039	GT	CAG
(GGA)	 AG	1168-1185	GT	GGG
(TCT)	 AG	1210-1308	GT	ATG
(GAG)	 AG	1332-1428	GT	ATG
(AAC)	 AG	1818-1971	GT	AGG
(TTA)	 AG	2379-2469	GT	GGG
-recovered GeneMark_model.109156_t, internal, 384, 512
-recovered GeneMark_model.109156_t, internal, 837, 848
-recovered GeneMark_model.109156_t, internal, 873, 908
-recovered GeneMark_model.109156_t, internal, 933, 938
-recovered GeneMark_model.109156_t, internal, 963, 971
-recovered GeneMark_model.109156_t, internal, 992, 1039
-recovered GeneMark_model.109156_t, internal, 1168, 1185
-recovered GeneMark_model.109156_t, internal, 1210, 1308
-recovered GeneMark_model.109156_t, internal, 1332, 1428
-recovered GeneMark_model.109156_t, internal, 1818, 1971
-recovered GeneMark_model.109156_t, internal, 2379, 2469
Couldn't classify 1818, 1971
Sorry, prediction GlimmerHMM_glimmerT_62563-T1 fails validation.
(ATG)	 AC	388-512	GT	AGG
(GAT)	 AG	1299-1428	GT	ATG
(AAC)	 AG	1818-1971	GT	AGG
-recovered GlimmerHMM_glimmerT_62563-T1, initial, 388, 512
-recovered GlimmerHMM_glimmerT_62563-T1, internal, 1299, 1428
-recovered GlimmerHMM_glimmerT_62563-T1, internal, 1818, 1971

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1290-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2469, rend_intergenic: 397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2748
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2469, rend_intergenic: 397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support