-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_129

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_129-snap.4-T1
Valid prediction for snap_scaffold_129-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_61349-T1
Valid prediction for snap_scaffold_129-snap.2-T1
Valid prediction for GeneMark_model.106673_t
Valid prediction for GeneMark_model.106674_t
Valid prediction for snap_scaffold_129-snap.3-T1
Valid prediction for GeneMark_model.106676_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61348-T1
Valid prediction for Augustus_model.g40809.t1
Valid prediction for GeneMark_model.106675_t
Couldn't classify 1070, 1197
Sorry, prediction GlimmerHMM_glimmerT_61350-T1 fails validation.
(GCC)	 AG	1070-1197	GT	CCG
(CCT)	 AG	2091-2197	GT	TGG
(GCG)	 AG	3481-3575	GT	CAG
(GAA)	 AG	6091-6211	GT	CGG
(CCA)	 AG	6354-6439	GT	CCG
(CTC)	 AG	6853-7013	GT	AGG
(AAA)	 AG	7312-7490	TG	GAT
-recovered GlimmerHMM_glimmerT_61350-T1, terminal, 7312, 7490
-recovered GlimmerHMM_glimmerT_61350-T1, internal, 1070, 1197
-recovered GlimmerHMM_glimmerT_61350-T1, internal, 2091, 2197
-recovered GlimmerHMM_glimmerT_61350-T1, internal, 3481, 3575
-recovered GlimmerHMM_glimmerT_61350-T1, internal, 6091, 6211
-recovered GlimmerHMM_glimmerT_61350-T1, internal, 6354, 6439
-recovered GlimmerHMM_glimmerT_61350-T1, internal, 6853, 7013
Valid prediction for GeneMark_model.106677_t
Valid prediction for Augustus_model.g40810.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 13800
-exon list size: 65


building trellis

1.5    
3.0    
4.5    
6.0    
7.5    
9.0    
10.4    
11.9    
13.4    
14.9    
16.4    
17.9    
19.4    
20.9    
22.4    
23.9    
25.4    
26.9    
28.4    
29.9    
31.3    
32.8    
34.3    
35.8    
37.3    
38.8    
40.3    
41.8    
43.3    
44.8    
46.3    
47.8    
49.3    
50.7    
52.2    
53.7    
55.2    
56.7    
58.2    
59.7    
61.2    
62.7    
64.2    
65.7    
67.2    
68.7    
70.1    
71.6    
73.1    
74.6    
76.1    
77.6    
79.1    
80.6    
82.1    
83.6    
85.1    
86.6    
88.1    
89.6    
91.0    
92.5    
94.0    
95.5    
97.0    
98.5    
-found 4 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support