-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1289

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109155_t
Couldn't classify 1122, 1318
Sorry, prediction snap_scaffold_1289-snap.1-T1 fails validation.
(GGG)	 AG	1122-1318	GT	AGG
-recovered snap_scaffold_1289-snap.1-T1, internal, 1122, 1318

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2685, 2737
Sorry, prediction GeneMark_model.109154_t fails validation.
(ATG)	 AA	1656-1714	GT	GGG
(GGT)	 AG	1836-1844	GT	GAG
(AGT)	 AG	2685-2737	GT	GAG
-recovered GeneMark_model.109154_t, initial, 1656, 1714
-recovered GeneMark_model.109154_t, internal, 1836, 1844
-recovered GeneMark_model.109154_t, internal, 2685, 2737
Valid prediction for GlimmerHMM_glimmerT_62562-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2748
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support