-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1285

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1380, 1514
Couldn't classify 2123, 2450
Sorry, prediction GeneMark_model.109146_t fails validation.
(GAG)	 AG	1380-1514	GT	AGG
(GGC)	 AG	1541-1611	GT	GAG
(AAG)	 AG	1633-1815	GT	GAG
(AGC)	 AG	1863-1889	GT	CGG
(CGG)	 AG	1925-1957	GT	GAG
(AAG)	 AG	1978-1995	GT	AGG
(GGA)	 AG	2021-2095	GT	AGG
(GGA)	 AG	2123-2450	GT	GAG
-recovered GeneMark_model.109146_t, internal, 1380, 1514
-recovered GeneMark_model.109146_t, internal, 1541, 1611
-recovered GeneMark_model.109146_t, internal, 1633, 1815
-recovered GeneMark_model.109146_t, internal, 1863, 1889
-recovered GeneMark_model.109146_t, internal, 1925, 1957
-recovered GeneMark_model.109146_t, internal, 1978, 1995
-recovered GeneMark_model.109146_t, internal, 2021, 2095
-recovered GeneMark_model.109146_t, internal, 2123, 2450

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41608.t1
add_exon() Sorry, Augustus_model.g41608.t1 1308-1396-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2759
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support