-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1283

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1608, 1651
Couldn't classify 1821, 2015
Sorry, prediction snap_scaffold_1283-snap.1-T1 fails validation.
(TGG)	 AG	1608-1651	GT	TGG
(AGT)	 AG	1821-2015	GT	GGG
-recovered snap_scaffold_1283-snap.1-T1, internal, 1608, 1651
-recovered snap_scaffold_1283-snap.1-T1, internal, 1821, 2015
Couldn't classify 1604, 1651
Couldn't classify 2697, 2744
Sorry, prediction GeneMark_model.109145_t fails validation.
(TCA)	 AG	1604-1651	GT	TGG
(TCA)	 AG	1671-1762	GT	GGG
(GGT)	 AG	1799-1906	GT	GGG
(AGG)	 AG	1943-2041	GT	ATG
(AGG)	 AG	2068-2105	GT	CAG
(CAG)	 AG	2432-2447	GT	CAG
(AGG)	 AG	2657-2671	GC	GAG
(AGA)	 AG	2697-2744	GC	GAG
-recovered GeneMark_model.109145_t, internal, 1604, 1651
-recovered GeneMark_model.109145_t, internal, 1671, 1762
-recovered GeneMark_model.109145_t, internal, 1799, 1906
-recovered GeneMark_model.109145_t, internal, 1943, 2041
-recovered GeneMark_model.109145_t, internal, 2068, 2105
-recovered GeneMark_model.109145_t, internal, 2432, 2447
-recovered GeneMark_model.109145_t, internal, 2657, 2671
-recovered GeneMark_model.109145_t, internal, 2697, 2744

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2766
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support