-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1282

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 210, 317
Sorry, prediction snap_scaffold_1282-snap.1-T1 fails validation.
(TGT)	 AG	210-317	GT	CAG
(TGC)	 AG	560-862	GT	TTG
(TTG)	 AG	1736-1767	AG	GAA
-recovered snap_scaffold_1282-snap.1-T1, terminal, 1736, 1767
-recovered snap_scaffold_1282-snap.1-T1, internal, 210, 317
-recovered snap_scaffold_1282-snap.1-T1, internal, 560, 862
Couldn't classify 210, 330
Couldn't classify 2628, 2739
Sorry, prediction GeneMark_model.109144_t fails validation.
(TGT)	 AG	210-330	GT	GAG
(TGC)	 AG	363-431	GT	CAG
(TAC)	 AG	472-540	GT	GAG
(TGC)	 AG	591-821	GT	GAG
(GAT)	 AG	965-970	GT	AGG
(AGA)	 AG	991-1083	GT	GAG
(AGA)	 AG	1105-1233	GT	TCG
(AGA)	 AG	2628-2739	GT	GGG
add_exon() Sorry, GeneMark_model.109144_t 210-330-terminal-3 is invalid.
-recovered GeneMark_model.109144_t, terminal, 210, 330
-recovered GeneMark_model.109144_t, terminal, 472, 540
-recovered GeneMark_model.109144_t, internal, 210, 330
-recovered GeneMark_model.109144_t, internal, 363, 431
-recovered GeneMark_model.109144_t, internal, 472, 540
-recovered GeneMark_model.109144_t, internal, 591, 821
-recovered GeneMark_model.109144_t, internal, 965, 970
-recovered GeneMark_model.109144_t, internal, 991, 1083
-recovered GeneMark_model.109144_t, internal, 1105, 1233
-recovered GeneMark_model.109144_t, internal, 2628, 2739

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62560-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2767
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support