-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1280

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 453, 494
Sorry, prediction GeneMark_model.109143_t fails validation.
(GGA)	 AG	453-494	GT	GGG
(GGG)	 AG	520-660	GC	GGG
(AGG)	 AG	686-827	GG	AGG
-recovered GeneMark_model.109143_t, terminal, 686, 827
-recovered GeneMark_model.109143_t, internal, 453, 494
-recovered GeneMark_model.109143_t, internal, 520, 660
Couldn't classify 2240, 2410
Sorry, prediction GeneMark_model.109142_t fails validation.
(ATG)	 GG	1134-1198	GT	GGG
(GAG)	 AG	2058-2213	GT	GAG
(GAA)	 AG	2240-2410	GT	TGG
-recovered GeneMark_model.109142_t, initial, 1134, 1198
add_exon() Sorry, GeneMark_model.109142_t 2058-2213-terminal-1 is invalid.
-recovered GeneMark_model.109142_t, terminal, 2058, 2213
-recovered GeneMark_model.109142_t, internal, 2058, 2213
-recovered GeneMark_model.109142_t, internal, 2240, 2410

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2775
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support