-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_128

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 10218, 10369
Sorry, prediction GlimmerHMM_glimmerT_61347-T1 fails validation.
(ATG)	 TG	252-294	GT	AGG
(GAA)	 AG	3224-3571	GT	AGG
(CTG)	 AG	3743-3952	GT	AAG
(GGA)	 AG	10218-10369	GT	AAG
-recovered GlimmerHMM_glimmerT_61347-T1, initial, 252, 294
-recovered GlimmerHMM_glimmerT_61347-T1, internal, 3224, 3571
-recovered GlimmerHMM_glimmerT_61347-T1, internal, 3743, 3952
-recovered GlimmerHMM_glimmerT_61347-T1, internal, 10218, 10369
Couldn't classify 80, 160
Sorry, prediction GeneMark_model.106670_t fails validation.
(AGA)	 AG	80-160	GT	GAG
(AAG)	 AG	183-188	GT	GAG
(AAG)	 AG	211-216	GT	GAG
(AAG)	 AG	241-276	GT	AAG
(AAG)	 AG	299-308	GG	GAG
add_exon() Sorry, GeneMark_model.106670_t 241-276-terminal-1 is invalid.
-recovered GeneMark_model.106670_t, terminal, 241, 276
-recovered GeneMark_model.106670_t, terminal, 299, 308
-recovered GeneMark_model.106670_t, internal, 80, 160
-recovered GeneMark_model.106670_t, internal, 183, 188
-recovered GeneMark_model.106670_t, internal, 211, 216
-recovered GeneMark_model.106670_t, internal, 241, 276
Valid prediction for Augustus_model.g40808.t1
Valid prediction for GeneMark_model.106671_t
Valid prediction for snap_scaffold_128-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 13900
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support