-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1279

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 82, 206
Couldn't classify 2466, 2610
Sorry, prediction snap_scaffold_1279-snap.1-T1 fails validation.
(ACT)	 AG	82-206	GT	AGG
(GAA)	 AG	443-524	GT	AGG
(GAG)	 AG	864-994	GT	AGG
(GGA)	 AG	1345-1516	GT	ATG
(AAA)	 AG	1611-1672	GT	AGG
(GAA)	 AG	1928-2014	GT	AGG
(CGT)	 AG	2466-2610	GT	AGG
-recovered snap_scaffold_1279-snap.1-T1, internal, 82, 206
-recovered snap_scaffold_1279-snap.1-T1, internal, 443, 524
-recovered snap_scaffold_1279-snap.1-T1, internal, 864, 994
-recovered snap_scaffold_1279-snap.1-T1, internal, 1345, 1516
-recovered snap_scaffold_1279-snap.1-T1, internal, 1611, 1672
-recovered snap_scaffold_1279-snap.1-T1, internal, 1928, 2014
-recovered snap_scaffold_1279-snap.1-T1, internal, 2466, 2610
Couldn't classify 82, 206
Couldn't classify 2472, 2610
Sorry, prediction GeneMark_model.109141_t fails validation.
(ACT)	 AG	82-206	GT	AGG
(GAA)	 AG	443-524	GT	AGG
(GAG)	 AG	864-994	GT	AGG
(TGG)	 AG	1363-1459	GT	AGG
(AAA)	 AG	1611-1672	GT	AGG
(GAA)	 AG	1928-2014	GT	AGG
(GGC)	 AG	2472-2610	GT	AGG
-recovered GeneMark_model.109141_t, internal, 82, 206
-recovered GeneMark_model.109141_t, internal, 443, 524
-recovered GeneMark_model.109141_t, internal, 864, 994
-recovered GeneMark_model.109141_t, internal, 1363, 1459
-recovered GeneMark_model.109141_t, internal, 1611, 1672
-recovered GeneMark_model.109141_t, internal, 1928, 2014
-recovered GeneMark_model.109141_t, internal, 2472, 2610
Couldn't classify 2466, 2610
Sorry, prediction GlimmerHMM_glimmerT_62559-T1 fails validation.
(ATG)	 AG	456-524	GT	AGG
(GAG)	 AG	864-994	GT	AGG
(GGA)	 AG	1345-1459	GT	AGG
(AAA)	 AG	1611-1672	GT	AGG
(GAA)	 AG	1928-2014	GT	AGG
(CGT)	 AG	2466-2610	GT	AGG
-recovered GlimmerHMM_glimmerT_62559-T1, initial, 456, 524
-recovered GlimmerHMM_glimmerT_62559-T1, internal, 456, 524
-recovered GlimmerHMM_glimmerT_62559-T1, internal, 864, 994
-recovered GlimmerHMM_glimmerT_62559-T1, internal, 1345, 1459
-recovered GlimmerHMM_glimmerT_62559-T1, internal, 1611, 1672
-recovered GlimmerHMM_glimmerT_62559-T1, internal, 1928, 2014
-recovered GlimmerHMM_glimmerT_62559-T1, internal, 2466, 2610
Couldn't classify 82, 206
Couldn't classify 2466, 2610
Sorry, prediction Augustus_model.g41606.t1 fails validation.
(ACT)	 AG	82-206	GT	AGG
(GAA)	 AG	443-524	GT	AGG
(GAG)	 AG	864-994	GT	AGG
(GGA)	 AG	1345-1459	GT	AGG
(AAA)	 AG	1611-1672	GT	AGG
(GAA)	 AG	1928-2014	GT	AGG
(CGT)	 AG	2466-2610	GT	AGG
-recovered Augustus_model.g41606.t1, internal, 82, 206
-recovered Augustus_model.g41606.t1, internal, 443, 524
-recovered Augustus_model.g41606.t1, internal, 864, 994
-recovered Augustus_model.g41606.t1, internal, 1345, 1459
-recovered Augustus_model.g41606.t1, internal, 1611, 1672
-recovered Augustus_model.g41606.t1, internal, 1928, 2014
-recovered Augustus_model.g41606.t1, internal, 2466, 2610
Couldn't classify 82, 206
Couldn't classify 2466, 2610
Sorry, prediction pasa_asmbl_9253.p1 fails validation.
(ACT)	 AG	82-206	GT	AGG
(GAA)	 AG	443-524	GT	AGG
(GAG)	 AG	864-994	GT	AGG
(GGA)	 AG	1345-1459	GT	AGG
(AAA)	 AG	1611-1672	GT	AGG
(GAA)	 AG	1928-2014	GT	AGG
(CGT)	 AG	2466-2610	GT	AGG
-recovered pasa_asmbl_9253.p1, internal, 82, 206
-recovered pasa_asmbl_9253.p1, internal, 443, 524
-recovered pasa_asmbl_9253.p1, internal, 864, 994
-recovered pasa_asmbl_9253.p1, internal, 1345, 1459
-recovered pasa_asmbl_9253.p1, internal, 1611, 1672
-recovered pasa_asmbl_9253.p1, internal, 1928, 2014
-recovered pasa_asmbl_9253.p1, internal, 2466, 2610

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 256, 336
Sorry, prediction snap_scaffold_1279-snap.2-T1 fails validation.
(CTT)	 AG	256-336	GT	CAG
(CTC)	 AG	1338-1470	TA	AAT
-recovered snap_scaffold_1279-snap.2-T1, terminal, 1338, 1470
-recovered snap_scaffold_1279-snap.2-T1, internal, 256, 336

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2610, rend_intergenic: 1315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2784
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2610, rend_intergenic: 1315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support