-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1278

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 21, 107
Couldn't classify 2460, 2591
Sorry, prediction GeneMark_model.109140_t fails validation.
(AAA)	 AG	21-107	GT	GAG
(GGA)	 AG	968-1042	GT	AGG
(TGC)	 AG	1195-1201	GT	TGG
(GAG)	 AG	2155-2307	GT	AGG
(GAG)	 AG	2460-2591	GT	TGG
-recovered GeneMark_model.109140_t, internal, 21, 107
-recovered GeneMark_model.109140_t, internal, 968, 1042
-recovered GeneMark_model.109140_t, internal, 1195, 1201
-recovered GeneMark_model.109140_t, internal, 2155, 2307
-recovered GeneMark_model.109140_t, internal, 2460, 2591
Couldn't classify 2155, 2307
Couldn't classify 2460, 2591
Sorry, prediction snap_scaffold_1278-snap.1-T1 fails validation.
(GAG)	 AG	2155-2307	GT	AGG
(GAG)	 AG	2460-2591	GT	TGG
-recovered snap_scaffold_1278-snap.1-T1, internal, 2155, 2307
-recovered snap_scaffold_1278-snap.1-T1, internal, 2460, 2591
Couldn't classify 2460, 2591
Sorry, prediction Augustus_model.g41605.t1 fails validation.
(ATG)	 CA	1526-1561	GT	AAG
(GAG)	 AG	2155-2307	GT	AGG
(GAG)	 AG	2460-2591	GT	TGG
-recovered Augustus_model.g41605.t1, initial, 1526, 1561
-recovered Augustus_model.g41605.t1, internal, 2155, 2307
-recovered Augustus_model.g41605.t1, internal, 2460, 2591
Couldn't classify 2155, 2254
Sorry, prediction GlimmerHMM_glimmerT_62558-T1 fails validation.
(GAG)	 AG	2155-2254	GT	CGG
(GAG)	 AG	2460-2518	CG	GAC
-recovered GlimmerHMM_glimmerT_62558-T1, terminal, 2460, 2518
-recovered GlimmerHMM_glimmerT_62558-T1, internal, 2155, 2254

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2787
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support