-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1275

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62556-T1
Couldn't classify 7, 494
Couldn't classify 2242, 2355
Sorry, prediction snap_scaffold_1275-snap.1-T1 fails validation.
(GGG)	 AG	7-494	GT	TGG
(AAG)	 AG	2242-2355	GT	AGG
-recovered snap_scaffold_1275-snap.1-T1, internal, 7, 494
-recovered snap_scaffold_1275-snap.1-T1, internal, 2242, 2355
Couldn't classify 32, 142
Sorry, prediction GeneMark_model.109137_t fails validation.
(GAC)	 AG	32-142	GT	GAG
(GGG)	 AG	176-508	GT	GGG
(GGA)	 AG	529-534	GT	GGG
(AGA)	 AG	884-920	AG	AGA
-recovered GeneMark_model.109137_t, terminal, 884, 920
-recovered GeneMark_model.109137_t, internal, 32, 142
-recovered GeneMark_model.109137_t, internal, 176, 508
-recovered GeneMark_model.109137_t, internal, 529, 534
Couldn't classify 2616, 2628
Sorry, prediction GeneMark_model.109136_t fails validation.
(ATG)	 AC	2182-2195	GT	AGG
(GGG)	 AG	2290-2355	GT	AGG
(GGG)	 AG	2380-2409	GT	GAG
(ATG)	 AG	2494-2505	GT	GGG
(GCA)	 AG	2616-2628	GT	AGG
-recovered GeneMark_model.109136_t, initial, 2182, 2195
-recovered GeneMark_model.109136_t, initial, 2494, 2505
-recovered GeneMark_model.109136_t, internal, 2290, 2355
-recovered GeneMark_model.109136_t, internal, 2380, 2409
-recovered GeneMark_model.109136_t, internal, 2494, 2505
-recovered GeneMark_model.109136_t, internal, 2616, 2628

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2803
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support