-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1274

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 20, 154
Sorry, prediction GeneMark_model.109135_t fails validation.
(ATC)	 AG	20-154	GT	CCG
(TGA)	 AG	248-258	GT	AGG
(GGG)	 AG	617-633	GT	CAG
(GGT)	 AG	699-863	GT	CAG
(GGG)	 AG	946-1042	TG	GAT
-recovered GeneMark_model.109135_t, terminal, 946, 1042
-recovered GeneMark_model.109135_t, internal, 20, 154
-recovered GeneMark_model.109135_t, internal, 248, 258
-recovered GeneMark_model.109135_t, internal, 617, 633
-recovered GeneMark_model.109135_t, internal, 699, 863

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2751, 2806
Sorry, prediction Augustus_model.g41603.t1 fails validation.
(ATG)	 GA	1074-1094	GT	AAG
(GGG)	 AG	1898-2060	GT	GGG
(ACC)	 AG	2751-2806		GT
-recovered Augustus_model.g41603.t1, initial, 1074, 1094
-recovered Augustus_model.g41603.t1, internal, 1898, 2060
Valid prediction for GlimmerHMM_glimmerT_62555-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2806
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support