-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1271

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1600, 1731
Couldn't classify 2626, 2723
Sorry, prediction snap_scaffold_1271-snap.1-T1 fails validation.
(AAA)	 AG	1600-1731	GT	AGG
(TTT)	 AG	2626-2723	GT	GCG
-recovered snap_scaffold_1271-snap.1-T1, internal, 1600, 1731
-recovered snap_scaffold_1271-snap.1-T1, internal, 2626, 2723
Valid prediction for GeneMark_model.109130_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 541, 549
Sorry, prediction GeneMark_model.109131_t fails validation.
(GGA)	 AG	541-549	GT	GTG
(GGT)	 AG	573-587	GT	GGG
(TGT)	 AG	611-619	GT	GGG
(TGT)	 AG	643-651	GT	GGG
(TGT)	 AG	675-695	GT	GTG
(AGA)	 AG	717-725	GT	GTG
(TGT)	 AG	767-781	GT	GAG
(TGT)	 AG	815-829	GT	GAG
(AGT)	 AG	857-871	GT	GAG
(AGT)	 AG	899-913	GT	GAG
(AGA)	 AG	975-1017	CC	GAC
-recovered GeneMark_model.109131_t, terminal, 975, 1017
-recovered GeneMark_model.109131_t, internal, 541, 549
-recovered GeneMark_model.109131_t, internal, 573, 587
-recovered GeneMark_model.109131_t, internal, 611, 619
-recovered GeneMark_model.109131_t, internal, 643, 651
-recovered GeneMark_model.109131_t, internal, 675, 695
-recovered GeneMark_model.109131_t, internal, 717, 725
-recovered GeneMark_model.109131_t, internal, 767, 781
-recovered GeneMark_model.109131_t, internal, 815, 829
-recovered GeneMark_model.109131_t, internal, 857, 871
-recovered GeneMark_model.109131_t, internal, 899, 913

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2818
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support