-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1270

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 62, 91
Couldn't classify 1756, 1878
Sorry, prediction GeneMark_model.109129_t fails validation.
(GTT)	 AG	62-91	GT	GGG
(GTT)	 AG	192-197	GT	GGG
(AGA)	 AG	219-230	GT	AGG
(AGA)	 AG	274-285	GT	AGG
(GTT)	 AG	336-341	GT	GGG
(AGA)	 AG	363-374	GT	AGG
(GGG)	 AG	450-461	GT	GGG
(AGA)	 AG	489-497	GT	GAG
(AGA)	 AG	529-540	GT	AGG
(AGA)	 AG	578-589	GT	AGG
(GGT)	 AG	680-724	GT	GGG
(AGA)	 AG	748-762	GT	GGG
(GGG)	 AG	792-800	GT	GGG
(AGA)	 AG	826-837	GT	AGG
(AGA)	 AG	869-877	GT	GGG
(GGG)	 AG	911-922	GT	GGG
(AGA)	 AG	944-952	GT	GAG
(AGA)	 AG	984-995	GT	AGG
(AAA)	 AG	1031-1037	GT	GGG
(AGA)	 AG	1064-1080	GT	GGG
(GGG)	 AG	1121-1132	GT	GGG
(AGA)	 AG	1168-1179	GT	AGG
(GTT)	 AG	1215-1220	GT	GGG
(AGG)	 AG	1254-1265	GT	GGG
(AAA)	 AG	1302-1310	GT	GGG
(AGA)	 AG	1365-1373	GT	GGG
(GGG)	 AG	1406-1417	GT	GGG
(GTT)	 AG	1454-1459	GT	GGG
(AGG)	 AG	1594-1602	GT	AAG
(AGA)	 AG	1631-1639	GT	GGG
(AGG)	 AG	1671-1685	GT	GGG
(AGA)	 AG	1708-1716	GT	GGG
(AGA)	 AG	1756-1878	GT	GGG
-recovered GeneMark_model.109129_t, terminal, 274, 285
-recovered GeneMark_model.109129_t, terminal, 363, 374
-recovered GeneMark_model.109129_t, terminal, 529, 540
-recovered GeneMark_model.109129_t, terminal, 578, 589
-recovered GeneMark_model.109129_t, terminal, 826, 837
-recovered GeneMark_model.109129_t, terminal, 984, 995
-recovered GeneMark_model.109129_t, terminal, 1168, 1179
-recovered GeneMark_model.109129_t, terminal, 1594, 1602
-recovered GeneMark_model.109129_t, internal, 62, 91
-recovered GeneMark_model.109129_t, internal, 192, 197
-recovered GeneMark_model.109129_t, internal, 219, 230
-recovered GeneMark_model.109129_t, internal, 274, 285
-recovered GeneMark_model.109129_t, internal, 336, 341
-recovered GeneMark_model.109129_t, internal, 363, 374
-recovered GeneMark_model.109129_t, internal, 450, 461
-recovered GeneMark_model.109129_t, internal, 489, 497
-recovered GeneMark_model.109129_t, internal, 529, 540
-recovered GeneMark_model.109129_t, internal, 578, 589
-recovered GeneMark_model.109129_t, internal, 680, 724
-recovered GeneMark_model.109129_t, internal, 748, 762
-recovered GeneMark_model.109129_t, internal, 792, 800
-recovered GeneMark_model.109129_t, internal, 826, 837
-recovered GeneMark_model.109129_t, internal, 869, 877
-recovered GeneMark_model.109129_t, internal, 911, 922
-recovered GeneMark_model.109129_t, internal, 944, 952
-recovered GeneMark_model.109129_t, internal, 984, 995
-recovered GeneMark_model.109129_t, internal, 1031, 1037
-recovered GeneMark_model.109129_t, internal, 1064, 1080
-recovered GeneMark_model.109129_t, internal, 1121, 1132
-recovered GeneMark_model.109129_t, internal, 1168, 1179
-recovered GeneMark_model.109129_t, internal, 1215, 1220
-recovered GeneMark_model.109129_t, internal, 1254, 1265
-recovered GeneMark_model.109129_t, internal, 1302, 1310
-recovered GeneMark_model.109129_t, internal, 1365, 1373
-recovered GeneMark_model.109129_t, internal, 1406, 1417
-recovered GeneMark_model.109129_t, internal, 1454, 1459
-recovered GeneMark_model.109129_t, internal, 1594, 1602
-recovered GeneMark_model.109129_t, internal, 1631, 1639
-recovered GeneMark_model.109129_t, internal, 1671, 1685
-recovered GeneMark_model.109129_t, internal, 1708, 1716
-recovered GeneMark_model.109129_t, internal, 1756, 1878

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2828
-exon list size: 82


building trellis

1.2    
2.4    
3.6    
4.8    
6.0    
7.1    
8.3    
9.5    
10.7    
11.9    
13.1    
14.3    
15.5    
16.7    
17.9    
19.0    
20.2    
21.4    
22.6    
23.8    
25.0    
26.2    
27.4    
28.6    
29.8    
31.0    
32.1    
33.3    
34.5    
35.7    
36.9    
38.1    
39.3    
40.5    
41.7    
42.9    
44.0    
45.2    
46.4    
47.6    
48.8    
50.0    
51.2    
52.4    
53.6    
54.8    
56.0    
57.1    
58.3    
59.5    
60.7    
61.9    
63.1    
64.3    
65.5    
66.7    
67.9    
69.0    
70.2    
71.4    
72.6    
73.8    
75.0    
76.2    
77.4    
78.6    
79.8    
81.0    
82.1    
83.3    
84.5    
85.7    
86.9    
88.1    
89.3    
90.5    
91.7    
92.9    
94.0    
95.2    
96.4    
97.6    
98.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support