-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1269

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62554-T1
Couldn't classify 872, 901
Sorry, prediction GeneMark_model.109128_t fails validation.
(GGG)	 AG	872-901	GT	GGG
(AGG)	 AG	930-950	GT	TTG
(TCG)	 AG	991-1028	GT	CAG
(GAC)	 AG	1075-1309	GT	AGG
(AGC)	 AG	1545-1583	GT	GAG
(AGA)	 AG	1627-1641	GT	AAG
(ATT)	 AG	1671-1703	GT	GCG
(ATT)	 AG	1737-1748	GT	AGG
(AGA)	 AG	1773-1778	GT	AGG
(AGC)	 AG	1803-1844	GT	AGG
(AGA)	 AG	1881-1886	GT	AAG
(AGG)	 AG	1949-1960	GT	AGG
(AAA)	 AG	1993-2010	GT	AGG
(GTT)	 AG	2043-2054	GT	AGG
(AGA)	 AG	2081-2086	GT	AGG
(AGA)	 AG	2113-2118	GT	AGG
(GTT)	 AG	2147-2170	GT	AGG
(AGA)	 AG	2197-2223	GT	ACG
(AAA)	 AG	2359-2485	CC	AGC
-recovered GeneMark_model.109128_t, terminal, 2359, 2485
-recovered GeneMark_model.109128_t, internal, 872, 901
-recovered GeneMark_model.109128_t, internal, 930, 950
-recovered GeneMark_model.109128_t, internal, 991, 1028
-recovered GeneMark_model.109128_t, internal, 1075, 1309
-recovered GeneMark_model.109128_t, internal, 1545, 1583
-recovered GeneMark_model.109128_t, internal, 1627, 1641
-recovered GeneMark_model.109128_t, internal, 1671, 1703
-recovered GeneMark_model.109128_t, internal, 1737, 1748
-recovered GeneMark_model.109128_t, internal, 1773, 1778
-recovered GeneMark_model.109128_t, internal, 1803, 1844
-recovered GeneMark_model.109128_t, internal, 1881, 1886
-recovered GeneMark_model.109128_t, internal, 1949, 1960
-recovered GeneMark_model.109128_t, internal, 1993, 2010
-recovered GeneMark_model.109128_t, internal, 2043, 2054
-recovered GeneMark_model.109128_t, internal, 2081, 2086
-recovered GeneMark_model.109128_t, internal, 2113, 2118
-recovered GeneMark_model.109128_t, internal, 2147, 2170
-recovered GeneMark_model.109128_t, internal, 2197, 2223
Couldn't classify 830, 1054
Sorry, prediction snap_scaffold_1269-snap.1-T1 fails validation.
(AAT)	 AG	830-1054	GT	AAG
-recovered snap_scaffold_1269-snap.1-T1, internal, 830, 1054

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2834
-exon list size: 44


building trellis

2.2    
4.3    
6.5    
8.7    
10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support