-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1267

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109123_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109124_t
add_exon() Sorry, GeneMark_model.109124_t 359-638-terminal-1 is invalid.
Couldn't classify 1884, 2111
Sorry, prediction snap_scaffold_1267-snap.1-T1 fails validation.
(ATG)	 AG	707-713	GT	TGG
(TCC)	 AG	1884-2111	GT	AGG
-recovered snap_scaffold_1267-snap.1-T1, initial, 707, 713
-recovered snap_scaffold_1267-snap.1-T1, internal, 707, 713
-recovered snap_scaffold_1267-snap.1-T1, internal, 1884, 2111
Valid prediction for snap_scaffold_1267-snap.2-T1
add_exon() Sorry, snap_scaffold_1267-snap.2-T1 331-638-terminal-1 is invalid.
Couldn't classify 2291, 2328
Sorry, prediction GeneMark_model.109122_t fails validation.
(ATG)	 AG	1978-2111	GT	AGG
(GAG)	 AG	2161-2169	GT	GAG
(AGG)	 AG	2192-2266	GT	GAG
(GGG)	 AG	2291-2328	GT	AGG
-recovered GeneMark_model.109122_t, initial, 1978, 2111
-recovered GeneMark_model.109122_t, internal, 1978, 2111
-recovered GeneMark_model.109122_t, internal, 2161, 2169
-recovered GeneMark_model.109122_t, internal, 2192, 2266
-recovered GeneMark_model.109122_t, internal, 2291, 2328

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2840
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support