-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1266

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1436, 1540
Sorry, prediction snap_scaffold_1266-snap.1-T1 fails validation.
(ATG)	 AG	716-874	GT	AGG
(ATT)	 AG	1436-1540	GT	AGG
-recovered snap_scaffold_1266-snap.1-T1, initial, 716, 874
-recovered snap_scaffold_1266-snap.1-T1, internal, 716, 874
-recovered snap_scaffold_1266-snap.1-T1, internal, 1436, 1540
Couldn't classify 53, 106
Couldn't classify 2779, 2828
Sorry, prediction GeneMark_model.109121_t fails validation.
(GAG)	 AG	53-106	GT	TTG
(GGA)	 AG	776-784	GT	AGG
(GGC)	 AG	808-813	GT	GAG
(GGA)	 AG	839-853	GT	GGG
(GGA)	 AG	907-1032	GT	AGG
(GGC)	 AG	1059-1097	GT	CAG
(GAA)	 AG	1533-1571	GT	GGG
(AGA)	 AG	1602-1616	GC	GAG
(AGA)	 AG	1642-1647	GT	GGG
(AGA)	 AG	1892-1948	GT	GAG
(AGA)	 AG	1970-2104	GT	GAG
(ATG)	 AG	2667-2675	GT	AGG
(AGG)	 AG	2711-2716	GT	GGG
(AGG)	 AG	2747-2752	GT	GGG
(GGT)	 AG	2779-2828	GT	GGG
-recovered GeneMark_model.109121_t, initial, 2667, 2675
add_exon() Sorry, GeneMark_model.109121_t 1970-2104-terminal-1 is invalid.
-recovered GeneMark_model.109121_t, terminal, 1970, 2104
-recovered GeneMark_model.109121_t, internal, 53, 106
-recovered GeneMark_model.109121_t, internal, 776, 784
-recovered GeneMark_model.109121_t, internal, 808, 813
-recovered GeneMark_model.109121_t, internal, 839, 853
-recovered GeneMark_model.109121_t, internal, 907, 1032
-recovered GeneMark_model.109121_t, internal, 1059, 1097
-recovered GeneMark_model.109121_t, internal, 1533, 1571
-recovered GeneMark_model.109121_t, internal, 1602, 1616
-recovered GeneMark_model.109121_t, internal, 1642, 1647
-recovered GeneMark_model.109121_t, internal, 1892, 1948
-recovered GeneMark_model.109121_t, internal, 1970, 2104
-recovered GeneMark_model.109121_t, internal, 2667, 2675
-recovered GeneMark_model.109121_t, internal, 2711, 2716
-recovered GeneMark_model.109121_t, internal, 2747, 2752
-recovered GeneMark_model.109121_t, internal, 2779, 2828

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2840
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support