-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1264

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 54, 62
Couldn't classify 2187, 2276
Sorry, prediction GeneMark_model.109119_t fails validation.
(AGA)	 AG	54-62	GT	GTG
(ACA)	 AG	154-164	GT	GTG
(CGG)	 AG	438-618	GT	TGG
(CTT)	 AG	1204-1324	GT	AGG
(GTA)	 AG	2187-2276	GT	AGG
-recovered GeneMark_model.109119_t, internal, 54, 62
-recovered GeneMark_model.109119_t, internal, 154, 164
-recovered GeneMark_model.109119_t, internal, 438, 618
-recovered GeneMark_model.109119_t, internal, 1204, 1324
-recovered GeneMark_model.109119_t, internal, 2187, 2276
Couldn't classify 438, 618
Couldn't classify 2157, 2276
Sorry, prediction Augustus_model.g41602.t1 fails validation.
(CGG)	 AG	438-618	GT	TGG
(CTT)	 AG	1204-1324	GT	AGG
(TGT)	 AG	2157-2276	GT	AGG
-recovered Augustus_model.g41602.t1, internal, 438, 618
-recovered Augustus_model.g41602.t1, internal, 1204, 1324
-recovered Augustus_model.g41602.t1, internal, 2157, 2276
Valid prediction for GlimmerHMM_glimmerT_62552-T1
Couldn't classify 438, 648
Couldn't classify 2187, 2276
Sorry, prediction snap_scaffold_1264-snap.1-T1 fails validation.
(CGG)	 AG	438-648	GT	GGG
(CTT)	 AG	1204-1324	GT	AGG
(GTA)	 AG	2187-2276	GT	AGG
-recovered snap_scaffold_1264-snap.1-T1, internal, 438, 648
-recovered snap_scaffold_1264-snap.1-T1, internal, 1204, 1324
-recovered snap_scaffold_1264-snap.1-T1, internal, 2187, 2276

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2841
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support