-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1263

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 436, 607
Couldn't classify 2517, 2651
Sorry, prediction snap_scaffold_1263-snap.1-T1 fails validation.
(CCC)	 AG	436-607	GT	TGG
(GAT)	 AG	2047-2167	GT	TGG
(CGC)	 AG	2517-2651	GT	GTG
-recovered snap_scaffold_1263-snap.1-T1, internal, 436, 607
-recovered snap_scaffold_1263-snap.1-T1, internal, 2047, 2167
-recovered snap_scaffold_1263-snap.1-T1, internal, 2517, 2651

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 44, 119
Sorry, prediction GeneMark_model.109118_t fails validation.
(ACT)	 AG	44-119	GT	CTG
(TCA)	 AG	171-348	GT	AGG
(GAG)	 AG	621-687	GT	CCG
(GTG)	 AG	787-929	GT	GAG
(GGG)	 AG	951-1019	GT	GGG
(GAA)	 AG	1045-1080	GT	AGG
(GGG)	 AG	1103-1114	GT	GGG
(GGG)	 AG	1136-1151	GT	GGG
(GGT)	 AG	2055-2068	GT	CCG
(AGG)	 AG	2097-2274	TG	AGT
-recovered GeneMark_model.109118_t, terminal, 2097, 2274
-recovered GeneMark_model.109118_t, internal, 44, 119
-recovered GeneMark_model.109118_t, internal, 171, 348
-recovered GeneMark_model.109118_t, internal, 621, 687
-recovered GeneMark_model.109118_t, internal, 787, 929
-recovered GeneMark_model.109118_t, internal, 951, 1019
-recovered GeneMark_model.109118_t, internal, 1045, 1080
-recovered GeneMark_model.109118_t, internal, 1103, 1114
-recovered GeneMark_model.109118_t, internal, 1136, 1151
-recovered GeneMark_model.109118_t, internal, 2055, 2068
Couldn't classify 787, 873
Sorry, prediction pasa_asmbl_9247.p1 fails validation.
(ATG)	 TC	173-348	GT	AGG
(GAG)	 AG	621-687	GT	CCG
(GTG)	 AG	787-873	GG	ACG
-recovered pasa_asmbl_9247.p1, initial, 173, 348
-recovered pasa_asmbl_9247.p1, internal, 621, 687
Valid prediction for GlimmerHMM_glimmerT_62551-T1
Valid prediction for Augustus_model.g41601.t1
Couldn't classify 2097, 2273
Sorry, prediction snap_scaffold_1263-snap.2-T1 fails validation.
(ATG)	 GG	998-1080	GT	AGG
(AGG)	 AG	2097-2273	GT	TAG
-recovered snap_scaffold_1263-snap.2-T1, initial, 998, 1080
-recovered snap_scaffold_1263-snap.2-T1, internal, 2097, 2273

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2651, rend_intergenic: 569  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2841
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2651, rend_intergenic: 569  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support