-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1262

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2329, 2399
Sorry, prediction GeneMark_model.109117_t fails validation.
(ATG)	 GT	914-918	GT	GTG
(GTA)	 AG	1973-2104	GT	CAG
(GTT)	 AG	2199-2271	GT	AGG
(CCG)	 AG	2329-2399	GT	GGG
-recovered GeneMark_model.109117_t, initial, 914, 918
-recovered GeneMark_model.109117_t, internal, 1973, 2104
-recovered GeneMark_model.109117_t, internal, 2199, 2271
-recovered GeneMark_model.109117_t, internal, 2329, 2399
Couldn't classify 185, 307
Couldn't classify 2199, 2271
Sorry, prediction snap_scaffold_1262-snap.2-T1 fails validation.
(CAG)	 AG	185-307	GT	ATG
(GTA)	 AG	1973-2104	GT	CAG
(GTT)	 AG	2199-2271	GT	AGG
-recovered snap_scaffold_1262-snap.2-T1, internal, 185, 307
-recovered snap_scaffold_1262-snap.2-T1, internal, 1973, 2104
-recovered snap_scaffold_1262-snap.2-T1, internal, 2199, 2271
Valid prediction for GlimmerHMM_glimmerT_62550-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62550-T1 1973-2135-terminal-1 is invalid.
Valid prediction for Augustus_model.g41600.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2577, 2667
Sorry, prediction GeneMark_model.109116_t fails validation.
(ATG)	 AG	2385-2470	GT	AGG
(GCT)	 AG	2577-2667	GT	AGG
-recovered GeneMark_model.109116_t, initial, 2385, 2470
-recovered GeneMark_model.109116_t, internal, 2385, 2470
-recovered GeneMark_model.109116_t, internal, 2577, 2667
Couldn't classify 2577, 2667
Sorry, prediction snap_scaffold_1262-snap.1-T1 fails validation.
(ATG)	 CG	784-851	GT	AGG
(CGT)	 AG	1983-2037	GT	AAG
(GTG)	 AG	2379-2470	GT	AGG
(GCT)	 AG	2577-2667	GT	AGG
-recovered snap_scaffold_1262-snap.1-T1, initial, 784, 851
-recovered snap_scaffold_1262-snap.1-T1, internal, 1983, 2037
-recovered snap_scaffold_1262-snap.1-T1, internal, 2379, 2470
-recovered snap_scaffold_1262-snap.1-T1, internal, 2577, 2667
Couldn't classify 2577, 2667
Sorry, prediction Augustus_model.g41599.t1 fails validation.
(ATG)	 CG	1996-2037	GT	AAG
(GTG)	 AG	2379-2470	GT	AGG
(GCT)	 AG	2577-2667	GT	AGG
-recovered Augustus_model.g41599.t1, initial, 1996, 2037
-recovered Augustus_model.g41599.t1, internal, 2379, 2470
-recovered Augustus_model.g41599.t1, internal, 2577, 2667

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2062, rend_intergenic: 185  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2845
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2062, rend_intergenic: 185  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support