-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1261

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 222, 349
Sorry, prediction GeneMark_model.109115_t fails validation.
(TGC)	 AG	222-349	GT	GGG
(AGA)	 AG	398-481	GT	GAG
(ATG)	 AG	559-603	GT	GGG
(AGG)	 AG	626-688	GT	GGG
(ACA)	 AG	718-837	GT	GGG
(AGA)	 AG	859-888	GT	AGG
(GCT)	 AG	1037-1166	GT	ATG
(CGC)	 AG	1963-2357	GT	CTG
(AGA)	 AG	2584-2730	GC	AAG
(GAC)	 AG	2773-2839	AG	AGA
-recovered GeneMark_model.109115_t, initial, 559, 603
-recovered GeneMark_model.109115_t, terminal, 2773, 2839
-recovered GeneMark_model.109115_t, internal, 222, 349
-recovered GeneMark_model.109115_t, internal, 398, 481
-recovered GeneMark_model.109115_t, internal, 559, 603
-recovered GeneMark_model.109115_t, internal, 626, 688
-recovered GeneMark_model.109115_t, internal, 718, 837
-recovered GeneMark_model.109115_t, internal, 859, 888
-recovered GeneMark_model.109115_t, internal, 1037, 1166
-recovered GeneMark_model.109115_t, internal, 1963, 2357
-recovered GeneMark_model.109115_t, internal, 2584, 2730
Valid prediction for GlimmerHMM_glimmerT_62549-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 491, 557
Sorry, prediction snap_scaffold_1261-snap.1-T1 fails validation.
(GGA)	 AG	491-557	GT	AGG
(GCA)	 AG	1564-1711	GT	GGG
(ATT)	 AG	2549-2649	GC	GAG
-recovered snap_scaffold_1261-snap.1-T1, terminal, 2549, 2649
-recovered snap_scaffold_1261-snap.1-T1, internal, 491, 557
-recovered snap_scaffold_1261-snap.1-T1, internal, 1564, 1711
-recovered snap_scaffold_1261-snap.1-T1, internal, 2549, 2649

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2845
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support