-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1259

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 796, 807
Couldn't classify 1333, 1344
Sorry, prediction GeneMark_model.109113_t fails validation.
(GGG)	 AG	796-807	GT	GGG
(ACA)	 AG	830-907	GT	AGG
(AGG)	 AG	940-951	GT	GGG
(GGG)	 AG	976-990	GT	GGG
(GGT)	 AG	1012-1053	GT	GGG
(GGT)	 AG	1075-1098	GT	AGG
(TGA)	 AG	1120-1128	GT	GGG
(GGA)	 AG	1158-1163	GT	ATG
(GAT)	 AG	1185-1217	GT	GGG
(GAG)	 AG	1243-1275	GT	GGG
(AGG)	 AG	1299-1310	GT	GGG
(GGG)	 AG	1333-1344	GT	GGG
-recovered GeneMark_model.109113_t, internal, 796, 807
-recovered GeneMark_model.109113_t, internal, 830, 907
-recovered GeneMark_model.109113_t, internal, 940, 951
-recovered GeneMark_model.109113_t, internal, 976, 990
-recovered GeneMark_model.109113_t, internal, 1012, 1053
-recovered GeneMark_model.109113_t, internal, 1075, 1098
-recovered GeneMark_model.109113_t, internal, 1120, 1128
-recovered GeneMark_model.109113_t, internal, 1158, 1163
-recovered GeneMark_model.109113_t, internal, 1185, 1217
-recovered GeneMark_model.109113_t, internal, 1243, 1275
-recovered GeneMark_model.109113_t, internal, 1299, 1310
-recovered GeneMark_model.109113_t, internal, 1333, 1344

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 233, 332
Sorry, prediction GlimmerHMM_glimmerT_62547-T1 fails validation.
(AGC)	 AG	233-332	GT	ACG
(AAG)	 AG	2494-2806	AC	GAA
-recovered GlimmerHMM_glimmerT_62547-T1, terminal, 2494, 2806
-recovered GlimmerHMM_glimmerT_62547-T1, internal, 233, 332
Couldn't classify 233, 332
Sorry, prediction snap_scaffold_1259-snap.1-T1 fails validation.
(AGC)	 AG	233-332	GT	ACG
(AAG)	 AG	2494-2806	AC	GAA
-recovered snap_scaffold_1259-snap.1-T1, terminal, 2494, 2806
-recovered snap_scaffold_1259-snap.1-T1, internal, 233, 332

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2847
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support