-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1258

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109111_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2102, 2233
Sorry, prediction GeneMark_model.109110_t fails validation.
(ATG)	 AA	1944-1951	GT	CAG
(GAG)	 AG	1991-2002	GT	GAG
(AGG)	 AG	2025-2078	GT	GGG
(AGA)	 AG	2102-2233	GT	CAG
-recovered GeneMark_model.109110_t, initial, 1944, 1951
-recovered GeneMark_model.109110_t, internal, 1991, 2002
-recovered GeneMark_model.109110_t, internal, 2025, 2078
-recovered GeneMark_model.109110_t, internal, 2102, 2233
Couldn't classify 471, 587
Sorry, prediction GeneMark_model.109112_t fails validation.
(AGA)	 AG	471-587	GT	GAG
(CGG)	 AG	615-671	GT	AAG
(AAG)	 AG	715-792	GT	CAG
(AGA)	 AG	838-870	GT	CAG
(AGA)	 AG	898-994	CT	GAC
-recovered GeneMark_model.109112_t, terminal, 898, 994
-recovered GeneMark_model.109112_t, internal, 471, 587
-recovered GeneMark_model.109112_t, internal, 615, 671
-recovered GeneMark_model.109112_t, internal, 715, 792
-recovered GeneMark_model.109112_t, internal, 838, 870

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2848
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support