-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1256

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109106_t
Couldn't classify 1320, 1682
Sorry, prediction snap_scaffold_1256-snap.1-T1 fails validation.
(GTG)	 AG	1320-1682	GT	AGG
-recovered snap_scaffold_1256-snap.1-T1, internal, 1320, 1682

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109105_t
Couldn't classify 292, 546
Sorry, prediction GeneMark_model.109107_t fails validation.
(ACA)	 AG	292-546	GT	GAG
(ACA)	 AG	570-798	CC	GAC
-recovered GeneMark_model.109107_t, terminal, 570, 798
-recovered GeneMark_model.109107_t, internal, 292, 546

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2850
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support