-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1255

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2425, 2679
Sorry, prediction GeneMark_model.109104_t fails validation.
(ATG)	 CA	1600-1616	GT	GTG
(AGA)	 AG	1666-1755	GC	AGG
(GGA)	 AG	1780-1872	GT	GGG
(GGA)	 AG	1905-1925	GT	GAG
(AGA)	 AG	2425-2679	GT	GAG
-recovered GeneMark_model.109104_t, initial, 1600, 1616
-recovered GeneMark_model.109104_t, internal, 1666, 1755
-recovered GeneMark_model.109104_t, internal, 1780, 1872
-recovered GeneMark_model.109104_t, internal, 1905, 1925
-recovered GeneMark_model.109104_t, internal, 2425, 2679

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 515, 594
Couldn't classify 1918, 1929
Sorry, prediction snap_scaffold_1255-snap.1-T1 fails validation.
(GTT)	 AG	515-594	GT	GTG
(GGG)	 AG	1288-1744	GT	CTG
(TGG)	 AG	1918-1929	GT	CGG
-recovered snap_scaffold_1255-snap.1-T1, internal, 515, 594
-recovered snap_scaffold_1255-snap.1-T1, internal, 1288, 1744
-recovered snap_scaffold_1255-snap.1-T1, internal, 1918, 1929
Valid prediction for GeneMark_model.109103_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2851
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support