-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1254

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41597.t1
add_exon() Sorry, Augustus_model.g41597.t1 2375-2559-terminal-1 is invalid.
Couldn't classify 2375, 2549
Couldn't classify 2701, 2838
Sorry, prediction GeneMark_model.109102_t fails validation.
(CCA)	 AG	2375-2549	GT	CAG
(AGC)	 AG	2701-2838	GT	GTG
-recovered GeneMark_model.109102_t, internal, 2375, 2549
-recovered GeneMark_model.109102_t, internal, 2701, 2838
Valid prediction for GlimmerHMM_glimmerT_62545-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62545-T1 2375-2559-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 300, 397
Couldn't classify 2240, 2341
Sorry, prediction snap_scaffold_1254-snap.1-T1 fails validation.
(CGG)	 AG	300-397	GT	CGG
(ATA)	 AG	2005-2116	GT	AGG
(GCG)	 AG	2240-2341	GT	AGG
add_exon() Sorry, snap_scaffold_1254-snap.1-T1 2005-2116-terminal-3 is invalid.
-recovered snap_scaffold_1254-snap.1-T1, terminal, 2005, 2116
-recovered snap_scaffold_1254-snap.1-T1, internal, 300, 397
-recovered snap_scaffold_1254-snap.1-T1, internal, 2005, 2116
-recovered snap_scaffold_1254-snap.1-T1, internal, 2240, 2341

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2854
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support