-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1253

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1422, 1548
Sorry, prediction GlimmerHMM_glimmerT_62544-T1 fails validation.
(AAG)	 AG	1422-1548	GT	CGG
(GTC)	 AG	2454-2578	TG	AGT
-recovered GlimmerHMM_glimmerT_62544-T1, terminal, 2454, 2578
-recovered GlimmerHMM_glimmerT_62544-T1, internal, 1422, 1548
Couldn't classify 1422, 1548
Couldn't classify 2656, 2671
Sorry, prediction snap_scaffold_1253-snap.1-T1 fails validation.
(AAG)	 AG	1422-1548	GT	CGG
(GTC)	 AG	2454-2541	GT	AGG
(GAG)	 AG	2656-2671	GT	TGG
-recovered snap_scaffold_1253-snap.1-T1, internal, 1422, 1548
-recovered snap_scaffold_1253-snap.1-T1, internal, 2454, 2541
-recovered snap_scaffold_1253-snap.1-T1, internal, 2656, 2671
Couldn't classify 1422, 1548
Couldn't classify 2799, 2854
Sorry, prediction Augustus_model.g41596.t1 fails validation.
(AAG)	 AG	1422-1548	GT	CGG
(GTC)	 AG	2454-2541	GT	AGG
(TGC)	 AG	2645-2671	GT	TGG
(CAT)	 AG	2799-2854		CC
-recovered Augustus_model.g41596.t1, internal, 1422, 1548
-recovered Augustus_model.g41596.t1, internal, 2454, 2541
-recovered Augustus_model.g41596.t1, internal, 2645, 2671
Couldn't classify 2799, 2837
Sorry, prediction GeneMark_model.109101_t fails validation.
(ATG)	 CC	434-436	GT	TGG
(AAG)	 AG	1422-1548	GT	CGG
(GAG)	 AG	1604-1619	GT	GTG
(AGA)	 AG	1669-1683	GT	GAG
(GGA)	 AG	1814-1858	GT	ATG
(AGA)	 AG	1926-1946	GT	AAG
(AGG)	 AG	1984-2004	GT	GTG
(TTC)	 AG	2166-2185	GT	GCG
(GTC)	 AG	2454-2541	GT	AGG
(CAT)	 AG	2799-2837	GT	GAG
-recovered GeneMark_model.109101_t, initial, 434, 436
-recovered GeneMark_model.109101_t, internal, 1422, 1548
-recovered GeneMark_model.109101_t, internal, 1604, 1619
-recovered GeneMark_model.109101_t, internal, 1669, 1683
-recovered GeneMark_model.109101_t, internal, 1814, 1858
-recovered GeneMark_model.109101_t, internal, 1926, 1946
-recovered GeneMark_model.109101_t, internal, 1984, 2004
-recovered GeneMark_model.109101_t, internal, 2166, 2185
-recovered GeneMark_model.109101_t, internal, 2454, 2541
-recovered GeneMark_model.109101_t, internal, 2799, 2837

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2854
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support