-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1252

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 878, 1033
Sorry, prediction snap_scaffold_1252-snap.1-T1 fails validation.
(GTT)	 AG	878-1033	GT	CGG
(AAG)	 AG	1739-1745	GT	AGG
(GAG)	 AG	2140-2267	GT	AGG
(AGA)	 AG	2542-2589	GT	CTG
(AGC)	 AG	2744-2800	GA	GAG
-recovered snap_scaffold_1252-snap.1-T1, terminal, 2744, 2800
-recovered snap_scaffold_1252-snap.1-T1, internal, 878, 1033
-recovered snap_scaffold_1252-snap.1-T1, internal, 1739, 1745
-recovered snap_scaffold_1252-snap.1-T1, internal, 2140, 2267
-recovered snap_scaffold_1252-snap.1-T1, internal, 2542, 2589
Valid prediction for GeneMark_model.109100_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2854
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support