-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1251

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 52, 126
Sorry, prediction GeneMark_model.109099_t fails validation.
(AGA)	 AG	52-126	GT	GAG
(AGG)	 AG	938-943	GT	AGG
(AGA)	 AG	968-1003	GT	AGG
(AGA)	 AG	1028-1063	GT	AGG
(AGA)	 AG	1088-1148	TT	GAT
-recovered GeneMark_model.109099_t, terminal, 1088, 1148
-recovered GeneMark_model.109099_t, internal, 52, 126
-recovered GeneMark_model.109099_t, internal, 938, 943
-recovered GeneMark_model.109099_t, internal, 968, 1003
-recovered GeneMark_model.109099_t, internal, 1028, 1063

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2857
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support