-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1250

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2448, 2617
Sorry, prediction snap_scaffold_1250-snap.2-T1 fails validation.
(ATG)	 AC	890-973	GT	CGG
(GTC)	 AG	2448-2617	GT	GGG
-recovered snap_scaffold_1250-snap.2-T1, initial, 890, 973
-recovered snap_scaffold_1250-snap.2-T1, internal, 2448, 2617

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 246, 533
Sorry, prediction GeneMark_model.109098_t fails validation.
(AGG)	 AG	246-533	GT	AGG
-recovered GeneMark_model.109098_t, internal, 246, 533
Couldn't classify 246, 537
Sorry, prediction GlimmerHMM_glimmerT_62543-T1 fails validation.
(AGG)	 AG	246-537	GT	GAG
(ACC)	 AG	2374-2525	CT	AAC
add_exon() Sorry, GlimmerHMM_glimmerT_62543-T1 246-537-terminal-3 is invalid.
-recovered GlimmerHMM_glimmerT_62543-T1, terminal, 246, 537
-recovered GlimmerHMM_glimmerT_62543-T1, terminal, 2374, 2525
-recovered GlimmerHMM_glimmerT_62543-T1, internal, 246, 537
Couldn't classify 246, 533
Sorry, prediction Augustus_model.g41595.t1 fails validation.
(AGG)	 AG	246-533	GT	AGG
-recovered Augustus_model.g41595.t1, internal, 246, 533
Couldn't classify 246, 533
Couldn't classify 2366, 2521
Sorry, prediction snap_scaffold_1250-snap.1-T1 fails validation.
(AGG)	 AG	246-533	GT	AGG
(TCC)	 AG	2366-2521	GT	CGG
-recovered snap_scaffold_1250-snap.1-T1, internal, 246, 533
-recovered snap_scaffold_1250-snap.1-T1, internal, 2366, 2521

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2612, rend_intergenic: 890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2857
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2612, rend_intergenic: 890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support