-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_125

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106658_t
Valid prediction for GeneMark_model.106659_t
Couldn't classify 653, 785
Sorry, prediction Augustus_model.g40800.t1 fails validation.
(GTA)	 AG	653-785	GT	ATG
(GGC)	 AG	1819-1999	AG	GAA
-recovered Augustus_model.g40800.t1, terminal, 1819, 1999
-recovered Augustus_model.g40800.t1, internal, 653, 785
Couldn't classify 653, 777
Sorry, prediction GeneMark_model.106656_t fails validation.
(GTA)	 AG	653-777	GT	TGG
(GTG)	 AG	830-838	TC	GAT
-recovered GeneMark_model.106656_t, terminal, 830, 838
-recovered GeneMark_model.106656_t, internal, 653, 777
Couldn't classify 653, 822
Couldn't classify 9785, 9932
Sorry, prediction snap_scaffold_125-snap.1-T1 fails validation.
(GTA)	 AG	653-822	GT	AAG
(AAG)	 AG	1856-1983	GT	AGG
(CAG)	 AG	9785-9932	GT	GAG
-recovered snap_scaffold_125-snap.1-T1, internal, 653, 822
-recovered snap_scaffold_125-snap.1-T1, internal, 1856, 1983
-recovered snap_scaffold_125-snap.1-T1, internal, 9785, 9932
Couldn't classify 14011, 14070
Sorry, prediction GlimmerHMM_glimmerT_61339-T1 fails validation.
(ATG)	 AC	658-822	GT	AAG
(AAG)	 AG	1856-1960	GT	AGG
(GTG)	 AG	14011-14070	GT	TGG
-recovered GlimmerHMM_glimmerT_61339-T1, initial, 658, 822
-recovered GlimmerHMM_glimmerT_61339-T1, internal, 1856, 1960
-recovered GlimmerHMM_glimmerT_61339-T1, internal, 14011, 14070

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 14269
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1984 - 14269
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support