-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1249

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109096_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 139, 171
Sorry, prediction GeneMark_model.109097_t fails validation.
(AAG)	 AG	139-171	GC	GAG
(AGA)	 AG	199-321	GT	TGG
(GGA)	 AG	421-456	GT	GAG
(AGA)	 AG	543-741	CC	GAC
-recovered GeneMark_model.109097_t, terminal, 543, 741
-recovered GeneMark_model.109097_t, internal, 139, 171
-recovered GeneMark_model.109097_t, internal, 199, 321
-recovered GeneMark_model.109097_t, internal, 421, 456

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2857
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support