-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1248

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 321, 487
Sorry, prediction snap_scaffold_1248-snap.1-T1 fails validation.
(TCC)	 AG	321-487	GT	GGG
(GAT)	 AG	534-620	GT	AGG
(ACA)	 AG	883-1127	CA	AGC
-recovered snap_scaffold_1248-snap.1-T1, terminal, 883, 1127
-recovered snap_scaffold_1248-snap.1-T1, internal, 321, 487
-recovered snap_scaffold_1248-snap.1-T1, internal, 534, 620
Valid prediction for Augustus_model.g41594.t1
Couldn't classify 2641, 2769
Sorry, prediction GeneMark_model.109095_t fails validation.
(ATG)	 AG	2131-2136	GT	TAG
(CTG)	 AG	2260-2302	GT	AGG
(GAG)	 AG	2493-2541	GT	GGG
(GAA)	 AG	2641-2769	GT	GAG
-recovered GeneMark_model.109095_t, initial, 2131, 2136
-recovered GeneMark_model.109095_t, internal, 2131, 2136
-recovered GeneMark_model.109095_t, internal, 2260, 2302
-recovered GeneMark_model.109095_t, internal, 2493, 2541
-recovered GeneMark_model.109095_t, internal, 2641, 2769
Couldn't classify 326, 479
Sorry, prediction GeneMark_model.109093_t fails validation.
(TTC)	 AG	326-479	GT	GAG
(GGT)	 AG	577-609	GT	AGG
(GGA)	 AG	954-1144	GT	TCG
(GAG)	 AG	1231-1349	AA	AGA
-recovered GeneMark_model.109093_t, terminal, 1231, 1349
-recovered GeneMark_model.109093_t, internal, 326, 479
-recovered GeneMark_model.109093_t, internal, 577, 609
-recovered GeneMark_model.109093_t, internal, 954, 1144

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109094_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2859
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support